CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003499_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	84.48	88.4
Os04t0450300-00	Rice	endoplasmic reticulum, golgi	67.24	80.53
HORVU7Hr1G096980.1	Barley	extracellular, vacuole	36.95	72.46
HORVU4Hr1G004070.1	Barley	cytosol	42.86	71.6
HORVU5Hr1G086510.1	Barley	mitochondrion	15.02	69.32
HORVU1Hr1G001970.1	Barley	mitochondrion	14.29	64.44
HORVU6Hr1G051510.1	Barley	nucleus	12.56	58.62
TraesCS7B01G475300.1	Wheat	endoplasmic reticulum, plasma membrane	23.15	48.96
TraesCS7D01G537300.1	Wheat	golgi, nucleus, plasma membrane	25.12	47.89
GSMUA_Achr8P09280_001	Banana	cytosol	5.42	45.83
EES05293	Sorghum	endoplasmic reticulum, golgi, plastid	41.63	44.71
TraesCS7A01G551400.1	Wheat	golgi, plastid	26.6	44.26
TraesCS7D01G538000.1	Wheat	golgi	27.83	44.14
HORVU7Hr1G121570.1	Barley	endoplasmic reticulum	27.09	43.48
EER99041	Sorghum	endoplasmic reticulum, plasma membrane	36.45	35.92
EES18560	Sorghum	golgi, plasma membrane	33.74	34.86
KRH38505	Soybean	plasma membrane, vacuole	20.44	29.12
OQU85775	Sorghum	golgi, plasma membrane, vacuole	30.05	28.84
EER92732	Sorghum	golgi	25.12	27.72
KRH13267	Soybean	plasma membrane	11.08	27.61
OQU76061	Sorghum	cytosol, peroxisome, plasma membrane	32.51	24.22
OQU92087	Sorghum	golgi, peroxisome, plastid	14.29	23.29
KXG39223	Sorghum	golgi, plasma membrane, plastid, vacuole	21.67	22.74
OQU82489	Sorghum	plasma membrane, vacuole	12.56	21.52
EER90301	Sorghum	endoplasmic reticulum, golgi, vacuole	18.72	18.91
EES18815	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	17.49	15.01

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	UniProt:A0A1B6PL88	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KXG26428	ProteinID:KXG26428	ProteinID:KXG26428.1	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF322	SMART:SM00184	EnsemblPlantsGene:SORBI_3006G100100	SUPFAM:SSF57850
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00081AD5C2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:47063770..47065993

Molecular Weight (calculated)

42624.6 Da

IEP (calculated)

7.760

GRAVY (calculated)

-0.259

Length

406 amino acids

Sequence
(BLAST)

001: MGMRELLLLV LCLLGAGMAV VDAQSSSSPP PAPQQTPPAP PQQTPFGRTM STFITVAISV FFFLLFICAY VNQCRLADPG AAAAAAAAAA AGAGGGGGPS
101: RRGKRGLDPA VVATFPIVSY REVVEHKIGK GVLECAVCLT SFEDDDDLRL LPHCSHAFHP ECIDPWLQSR VTCPLCRANL EKPAPLPAPL LLPVPAVAPP
201: SPSPSPPAVA VALSPRQRPS PSPPPPEAVA IPVLDDEGLE EDSDDEDDRK EEAIELEMLR SARRAARMPR SHSTGHSLFA AAAAAAEEGD HERFTLRLPD
301: HVREQVLRSR RLRHATSLLD LSELSSEGGS SRGGRRVAGA GGGFGNGGSS HGGRRWQSFL ARTVSWARGG GDGSVRRGWD GSTRRGRDGG ESSRKGAASP
401: LPAGRP

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.