Factsheet for HORVU5Hr1G086510.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G001970.1	Barley	mitochondrion	80.68	78.89
HORVU3Hr1G007990.1	Barley	cytosol	54.55	53.93
HORVU6Hr1G051510.1	Barley	nucleus	43.18	43.68
HORVU7Hr1G096980.1	Barley	extracellular, vacuole	71.59	30.43
HORVU4Hr1G004070.1	Barley	cytosol	71.59	25.93
GSMUA_Achr8P09280_001	Banana	cytosol	12.5	22.92
Os04t0450300-00	Rice	endoplasmic reticulum, golgi	68.18	17.7
Zm00001d003499_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	68.18	15.46
KXG26428	Sorghum	plasma membrane	69.32	15.02
HORVU7Hr1G121570.1	Barley	endoplasmic reticulum	43.18	15.02
HORVU4Hr1G022090.1	Barley	endoplasmic reticulum, golgi, plasma membrane	28.41	11.79
HORVU4Hr1G080840.1	Barley	cytosol	30.68	11.39
HORVU3Hr1G098880.1	Barley	plasma membrane	38.64	9.91
HORVU5Hr1G069980.1	Barley	plasma membrane	43.18	9.9
HORVU5Hr1G106000.1	Barley	golgi	37.5	9.62
KRH13267	Soybean	plasma membrane	17.05	9.2
HORVU6Hr1G022590.1	Barley	golgi, mitochondrion	40.91	8.91
HORVU6Hr1G077610.1	Barley	plasma membrane	39.77	8.62
HORVU4Hr1G078260.1	Barley	plasma membrane	29.55	7.28
HORVU7Hr1G036380.2	Barley	endoplasmic reticulum	34.09	7.21
KRH38505	Soybean	plasma membrane, vacuole	22.73	7.02
HORVU4Hr1G057610.1	Barley	plastid	31.82	6.8
HORVU7Hr1G098470.1	Barley	plastid	27.27	6.0
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	25.0	5.58

Protein Annotations

EnsemblPlants:HORVU5Hr1G086510.1	EnsemblPlantsGene:HORVU5Hr1G086510	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_H2	PANTHER:PTHR14155
PANTHER:PTHR14155:SF460	PFAM:PF12678	PFscan:PS50089	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF57850
UniParc:UPI000B46F282	UniProt:A0A287S4H5	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:576415732..576415996

Molecular Weight (calculated)

9708.9 Da

IEP (calculated)

8.364

GRAVY (calculated)

-0.309

Length

88 amino acids

Sequence
(BLAST)

1: PTVAPPRKKN VLHLLLRLLP HCSHAFHPEC IDPWLEARIT CPLCRANLEK PSPPAVVPPL PEQVARRQPS PSSSPPHAVA IPVREEAE

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.