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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • endoplasmic reticulum 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, mitochondrion, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Predotar:plastid
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G104900.1 Wheat mitochondrion 87.38 93.02
TraesCS4D01G200100.1 Wheat plastid 92.96 92.51
TraesCS4B01G199100.1 Wheat plastid 93.2 85.91
KXG39223 Sorghum golgi, plasma membrane, plastid, vacuole 61.41 65.37
Zm00001d029395_P001 Maize plasma membrane, plastid 58.98 63.45
Os03t0391100-00 Rice endoplasmic reticulum, golgi 57.52 54.48
AT4G09100.1 Thale cress extracellular 13.11 40.91
HORVU3Hr1G007990.1 Barley cytosol 8.74 40.45
HORVU6Hr1G051510.1 Barley nucleus 7.77 36.78
CDX75097 Canola extracellular 11.65 34.78
Bra038386.1-P Field mustard extracellular 11.41 34.06
CDY48058 Canola extracellular 11.41 34.06
GSMUA_AchrUn_... Banana plastid 29.37 33.61
HORVU5Hr1G086510.1 Barley mitochondrion 6.8 31.82
HORVU4Hr1G022090.1 Barley endoplasmic reticulum, golgi, plasma membrane 16.26 31.6
KRG92822 Soybean endoplasmic reticulum, plasma membrane, vacuole 25.0 30.65
CDY53236 Canola plasma membrane 25.73 30.55
HORVU5Hr1G069980.1 Barley plasma membrane 28.16 30.21
Bra010641.1-P Field mustard extracellular, golgi 22.57 30.19
CDX90377 Canola extracellular, golgi 22.57 30.19
CDY39477 Canola extracellular 22.33 29.68
KRH33975 Soybean golgi, plasma membrane, vacuole 25.73 29.53
CDX82175 Canola extracellular 16.75 29.49
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 21.6 29.28
CDX86162 Canola endoplasmic reticulum, plasma membrane, vacuole 21.6 29.28
CDY19719 Canola endoplasmic reticulum, plasma membrane, vacuole 24.76 29.14
Bra036631.1-P Field mustard plasma membrane 24.51 28.86
CDX99986 Canola plasma membrane 24.03 28.37
Bra040642.1-P Field mustard plasma membrane 26.46 28.24
KRH68588 Soybean plasma membrane 25.0 28.14
CDY05049 Canola plasma membrane 19.9 28.08
CDX80653 Canola plasma membrane 20.63 28.05
KRG96857 Soybean vacuole 25.49 28.0
CDY18787 Canola plasma membrane 26.21 27.91
HORVU4Hr1G078260.1 Barley plasma membrane 24.03 27.73
KRH16796 Soybean cytosol, endoplasmic reticulum, plasma membrane, plastid 25.49 27.7
KRH72413 Soybean cytosol, golgi, vacuole 25.0 27.54
HORVU6Hr1G022590.1 Barley golgi, mitochondrion 26.94 27.48
AT5G27420.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 24.51 27.45
CDX86163 Canola plasma membrane 19.9 27.33
CDY25038 Canola plasma membrane 24.27 27.03
KRH62285 Soybean endoplasmic reticulum, plasma membrane, vacuole 22.09 26.76
CDY05577 Canola plasma membrane 24.76 26.7
CDY31657 Canola extracellular, plasma membrane, plastid 23.79 26.63
Bra009962.1-P Field mustard mitochondrion, plastid 18.45 26.57
HORVU5Hr1G106000.1 Barley golgi 22.09 26.53
AT3G05200.1 Thale cress plasma membrane 25.49 26.38
PGSC0003DMT400046825 Potato endoplasmic reticulum, plasma membrane, vacuole 25.49 26.38
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 23.54 26.36
CDX84269 Canola endoplasmic reticulum, plasma membrane, plastid 23.54 26.36
KRH52998 Soybean endoplasmic reticulum, extracellular, plasma membrane 21.36 26.35
HORVU3Hr1G098880.1 Barley plasma membrane 21.84 26.24
AT2G35000.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 24.03 26.19
Solyc03g112340.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 25.24 26.13
AT4G40070.1 Thale cress extracellular, golgi, mitochondrion, plastid 20.39 26.01
VIT_14s0128g00120.t01 Wine grape plasma membrane, plastid, vacuole 26.46 25.95
Bra020591.1-P Field mustard plasma membrane 23.79 25.72
HORVU1Hr1G001970.1 Barley mitochondrion 5.58 25.56
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 23.79 25.39
Bra005375.1-P Field mustard cytosol, nucleus, plastid 19.17 25.24
CDX84270 Canola cytosol, plastid, vacuole 19.17 25.24
CDY31656 Canola cytosol, endoplasmic reticulum, plastid 19.17 25.24
VIT_18s0001g06670.t01 Wine grape extracellular, plasma membrane, vacuole 24.27 25.13
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 20.63 25.07
PGSC0003DMT400005472 Potato endoplasmic reticulum, plasma membrane, vacuole 23.79 25.06
AT1G35330.1 Thale cress endoplasmic reticulum 19.9 25.0
Solyc04g074820.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 23.79 24.94
HORVU4Hr1G080840.1 Barley cytosol 14.32 24.89
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 21.6 24.79
PGSC0003DMT400073575 Potato extracellular, plasma membrane 25.97 24.71
AT2G34990.2 Thale cress plasma membrane 19.42 24.69
CDX90713 Canola extracellular, golgi, plasma membrane 20.15 24.48
CDX82176 Canola extracellular 21.6 24.38
AT4G09120.1 Thale cress plasma membrane 20.39 24.35
AT4G09110.1 Thale cress endoplasmic reticulum, extracellular, golgi 17.72 24.17
CDY70284 Canola plasma membrane 22.33 23.65
Bra008016.1-P Field mustard plasma membrane 22.82 23.33
CDY03651 Canola plasma membrane 22.82 23.33
AT1G72200.1 Thale cress plasma membrane 22.82 23.27
AT4G09130.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 20.15 23.25
HORVU6Hr1G077610.1 Barley plasma membrane 22.82 23.15
CDX82179 Canola plasma membrane 19.42 22.79
HORVU7Hr1G096980.1 Barley extracellular, vacuole 11.41 22.71
Bra040855.1-P Field mustard golgi, plasma membrane 20.63 22.61
CDY21367 Canola golgi, plasma membrane 20.63 22.61
CDY62007 Canola golgi, plasma membrane 20.63 22.61
CDY03116 Canola plasma membrane 18.93 22.1
CDY12022 Canola plasma membrane 18.93 22.1
AT1G22500.1 Thale cress plasma membrane 20.39 22.05
HORVU7Hr1G036380.2 Barley endoplasmic reticulum 22.09 21.88
HORVU4Hr1G004070.1 Barley cytosol 12.86 21.81
KRH72412 Soybean nucleus, plasma membrane, plastid 20.39 21.76
Bra008015.1-P Field mustard plasma membrane 20.87 21.72
CDY03652 Canola plasma membrane 20.87 21.72
Bra028075.1-P Field mustard plasma membrane 18.45 21.53
Bra012330.1-P Field mustard golgi, plasma membrane 17.96 21.51
KRH16794 Soybean plasma membrane 20.39 21.43
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 17.48 20.69
PGSC0003DMT400045807 Potato plasma membrane 18.93 20.63
Solyc12g087860.1.1 Tomato vacuole 18.2 20.11
HORVU7Hr1G121570.1 Barley endoplasmic reticulum 12.14 19.76
CDY70750 Canola extracellular, mitochondrion, nucleus 13.35 18.15
CDY27787 Canola extracellular, plasma membrane, vacuole 12.62 17.28
HORVU1Hr1G095220.1 Barley golgi, plasma membrane 16.5 17.26
CDY05145 Canola plasma membrane 12.38 17.17
HORVU7Hr1G098470.1 Barley plastid 14.81 15.25
CDY12527 Canola extracellular, plasma membrane, vacuole 7.52 13.03
CDY25739 Canola endoplasmic reticulum, extracellular, plasma membrane 7.28 12.61
CDY50446 Canola mitochondrion 7.28 12.55
Protein Annotations
EnsemblPlants:HORVU4Hr1G057610.1EnsemblPlantsGene:HORVU4Hr1G057610Gene3D:3.30.40.10GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155PANTHER:PTHR14155:SF322
PFAM:PF13639PFscan:PS50089SEG:segSignalP:SignalP-noTMSMART:SM00184SUPFAM:SSF57850
TMHMM:TMhelixUniParc:UPI000B46C2C6UniProt:A0A287P775MapMan:19.2.2.1.5.3.3::
Description
No Description!
Coordinates
chrchr4H:+:483257572..483259112
Molecular Weight (calculated)
42740.8 Da
IEP (calculated)
7.696
GRAVY (calculated)
0.156
Length
412 amino acids
Sequence
(BLAST)
001: MAPSPPSTTC IHRHRPFLRL LVLVLAGIRP ASSQFILTPP TAGATFAGAS TPPPPPTAGG LGSGTFNVAT SILFVGVIVA LFLVGFFSAY LRRCADAATG
101: ARRGGAAANA NAAVAAAAAA AFSSAVSRSR RRPGLDVAAM EALPVLTYAR AMAVKAGRGA LECAVCLAEF ADDGEKLRLL PGCCHVFHAA CIDVWLSAHV
201: TCPVCRADLA DPAVAAAGHV LAADLAAQVE TCNDTVITVE TSDPAPVEDA VSDQQSAETA EERVDRFTLR LPERLRREIE EAKRLRRAMS AVTAAAAASP
301: SSGRWVPSTL RTMSAARPSG RWSALFRALS GQNRGELGGS SRRVAPLKTH AASDDAVELV VVQDDGGQAE KYYAHSLTFA GFVIDGDVAA GDWNPEVFQI
401: SSAVPAAATS QR
Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Arabidopsis Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.