Factsheet for HORVU5Hr1G106000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 2
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G446700.1	Wheat	golgi	87.46	88.76
TraesCS5B01G442500.1	Wheat	golgi	86.3	87.32
HORVU3Hr1G098880.1	Barley	plasma membrane	74.93	74.93
Zm00001d016901_P001	Maize	vacuole	61.81	61.1
Os02t0572300-00	Rice	nucleus, plastid	62.1	50.96
HORVU3Hr1G007990.1	Barley	cytosol	12.83	49.44
HORVU6Hr1G051510.1	Barley	nucleus	11.08	43.68
GSMUA_Achr8P09280_001	Banana	cytosol	5.83	41.67
HORVU5Hr1G086510.1	Barley	mitochondrion	9.62	37.5
HORVU1Hr1G001970.1	Barley	mitochondrion	9.04	34.44
HORVU7Hr1G096980.1	Barley	extracellular, vacuole	19.83	32.85
HORVU5Hr1G069980.1	Barley	plasma membrane	34.11	30.47
HORVU4Hr1G080840.1	Barley	cytosol	20.99	30.38
HORVU4Hr1G004070.1	Barley	cytosol	20.41	28.81
HORVU6Hr1G022590.1	Barley	golgi, mitochondrion	31.2	26.49
HORVU4Hr1G022090.1	Barley	endoplasmic reticulum, golgi, plasma membrane	15.74	25.47
KRH38505	Soybean	plasma membrane, vacuole	20.99	25.26
HORVU6Hr1G077610.1	Barley	plasma membrane	27.7	23.4
KRH13267	Soybean	plasma membrane	11.08	23.31
HORVU4Hr1G078260.1	Barley	plasma membrane	24.2	23.25
HORVU4Hr1G057610.1	Barley	plastid	26.53	22.09
HORVU7Hr1G121570.1	Barley	endoplasmic reticulum	16.04	21.74
HORVU7Hr1G036380.2	Barley	endoplasmic reticulum	23.62	19.47
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	18.66	16.24
HORVU7Hr1G098470.1	Barley	plastid	17.2	14.75

Protein Annotations

EnsemblPlants:HORVU5Hr1G106000.1	EnsemblPlantsGene:HORVU5Hr1G106000	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF434
PFAM:PF13639	PFscan:PS50089	SEG:seg	SignalP:SignalP-TM	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI000B468D32	UniProt:A0A287SLI3	MapMan:19.2.2.1.5.3.3	:	:

Description

No Description!

Coordinates

chrchr5H:-:623101853..623102906

Molecular Weight (calculated)

37544.2 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.424

Length

343 amino acids

Sequence
(BLAST)

001: MAASRKRAFA SVLFITANAS CAAAQTPGGP GSDNSMSFSD VMAVSFFMAI FFPVLVVLLA FACLRLFRPP PDDPPATENS WSEWPRPRHK EGLDAAEIAA
101: LPLVSYRDVK QHRASDGRID PLECAVCLLE FDDDDSLRLL PTCPHAFHPQ CIGLWLEKHV TCPLCRASVL DPPPPPAPEQ ELETPAPPDS PPARDHETVV
201: LIEDDPSRNI EEEEDRTGIL ARTRREAGRE ALPRSNSTGH ERCGGMERFA PRLPEHVRLE ILVSHRLRHV TSAVASVRVR EGSAHDPAAG GNSVRSAVAR
301: LFSLFAPGDG WSRDVDDKSA GLPRRRRDDS TRGAGAGEDK RNH

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.