Factsheet for Os02t0572300-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G446700.1	Wheat	golgi	52.39	64.79
TraesCS5B01G442500.1	Wheat	golgi	52.39	64.6
TraesCS3A01G459700.1	Wheat	vacuole	51.91	63.45
TraesCS3B01G499500.1	Wheat	vacuole	52.39	63.11
TraesCS3D01G452500.1	Wheat	golgi, plasma membrane, vacuole	52.15	63.01
HORVU3Hr1G098880.1	Barley	plasma membrane	51.67	62.97
Zm00001d016901_P001	Maize	vacuole	51.67	62.25
HORVU5Hr1G106000.1	Barley	golgi	50.96	62.1
GSMUA_Achr8P09280_001	Banana	cytosol	5.02	43.75
Os04t0450300-00	Rice	endoplasmic reticulum, golgi	27.03	33.33
Os02t0572200-01	Rice	plasma membrane	27.75	33.24
Os09t0468300-00	Rice	golgi, plasma membrane	26.08	28.17
Os10t0574400-01	Rice	mitochondrion, plasma membrane, plastid	13.16	27.64
KRH38505	Soybean	plasma membrane, vacuole	16.99	24.91
Os08t0484200-01	Rice	golgi	24.4	24.7
Os02t0759400-01	Rice	endoplasmic reticulum, golgi, mitochondrion, plastid	24.4	23.34
Os03t0188200-01	Rice	golgi	18.9	22.38
KRH13267	Soybean	plasma membrane	8.61	22.09
Os06t0218300-01	Rice	endoplasmic reticulum, extracellular, golgi	23.21	21.95
Os03t0391100-00	Rice	endoplasmic reticulum, golgi	19.38	18.62
Os06t0695900-01	Rice	endoplasmic reticulum, vacuole	16.27	17.04
Os05t0596500-01	Rice	endoplasmic reticulum, plasma membrane	13.88	15.06

Protein Annotations

EnsemblPlants:Os02t0572300-00	EnsemblPlantsGene:Os02g0572300	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF434
PFAM:PF13639	PFscan:PS50089	ProteinID:BAS79353.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI00039396B6	UniProt:A0A0N7KFJ0	MapMan:19.2.2.1.5.3.3	:	:

Description

Similar to RING-H2 finger protein ATL3B. (Os02t0572300-00)

Coordinates

chr2:-:21922917..21926203

Molecular Weight (calculated)

44929.4 Da

IEP (calculated)

8.747

GRAVY (calculated)

-0.449

Length

418 amino acids

Sequence
(BLAST)

001: MWDPRLFPPS LSTLQCGTHR DEGAAALSSL RPATAAPSSR GRPPSRRAPP PPPLDPPSRS SPAAAAAAEL CPERRRGRRR EPPASRLPPP RVTAAPRVAA
101: RLLASPPRER RISFFMAVFF PVFIVLLAFA CLRLFRPLDD DDGEPALADT SSSEWSRRGG GGGNRAGLDA AEIAALPLVS YRDARRHRIG DARGDPLECA
201: VCLLEFEDDD ALRLLPACPH AFHPECIGLW LEKHVTCPLC RANVLDAPPP PPPPPPSLEQ DTASPPPAHE TVVVIGDAGA SEEAEAEERI RIQCLAGVRR
301: AAGRQALPRS NSTGHERGGG GMERFALRLP EHVRLEILMS HRLRHVTSAV ASVRVREGSA HDAGAVRNAV ARLLSLFVPG AGWKGDDEGK SSKAAEGSSR
401: RRRDESARGG VGEEKRSE

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.