Factsheet for TraesCS3D01G452500.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G499500.1	Wheat	vacuole	95.09	94.81
TraesCS3A01G459700.1	Wheat	vacuole	93.64	94.74
HORVU3Hr1G098880.1	Barley	plasma membrane	82.08	82.8
TraesCS5D01G446700.1	Wheat	golgi	77.75	79.59
Zm00001d016901_P001	Maize	vacuole	59.83	59.65
Os02t0572300-00	Rice	nucleus, plastid	63.01	52.15
GSMUA_Achr8P09280_001	Banana	cytosol	5.78	41.67
TraesCS5D01G254900.1	Wheat	golgi, plasma membrane	32.95	29.08
TraesCS2D01G315800.1	Wheat	golgi	30.64	28.42
TraesCS3D01G050600.1	Wheat	plasma membrane	28.03	27.79
TraesCS6D01G113000.1	Wheat	golgi	30.64	26.43
TraesCS3D01G495500.1	Wheat	vacuole	29.48	26.42
KRH38505	Soybean	plasma membrane, vacuole	20.81	25.26
TraesCS7D01G537300.1	Wheat	golgi, nucleus, plasma membrane	15.32	24.88
TraesCS2D01G501500.1	Wheat	plastid	14.16	24.87
TraesCS6D01G294800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	28.03	23.95
TraesCS4D01G302600.1	Wheat	plasma membrane	23.99	23.38
KRH13267	Soybean	plasma membrane	10.98	23.31
TraesCS7D01G178000.1	Wheat	golgi	27.46	23.28
TraesCS7D01G538000.1	Wheat	golgi	16.18	21.88
TraesCS4D01G200100.1	Wheat	plastid	25.72	21.5
TraesCS7D01G420000.1	Wheat	plastid	16.76	14.46
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	16.76	13.36

Protein Annotations

EnsemblPlants:TraesCS3D01G452500.1	EnsemblPlantsGene:TraesCS3D01G452500	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF434	PFAM:PF13639	PFscan:PS50089	PFscan:PS51257
SEG:seg	SignalP:SignalP-TM	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	TMHMM:TMhelix
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:560117472..560118512

Molecular Weight (calculated)

37306.3 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.273

Length

346 amino acids

Sequence
(BLAST)

001: MAASGKRSLA AVILAAIASC AAAQTPGGPG SHKNSMTFSD VMAILFFMAF FFPVFVVLLA FACLRLFRPP DEPPAGDDSS SDRSLHKEGL NAAEIAALPL
101: VSYRDVKQHR IGASGVDPLE CAVCLLEFGD DDSLRLLPAC PHAFHPECIS LWLAKHVTCP LCRASVLDPP VLDPEELMQP PSPEETPAPH ESPRRLADHD
201: TVVVLIEDPG CNEEEDERTR VLARRMRCEA AGRQALPRSN STGHERAGGT EHFALRLPEH VRLEILMSHR LRHVTSAVAS VRVREGSAHD PSAGGNSVRS
301: AVARLLSLFA PGDGRKGDDE EKSGGSSRRR RDDSARGAGE DKLRNG

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.