Factsheet for TraesCS3B01G499500.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G452500.1	Wheat	golgi, plasma membrane, vacuole	94.81	95.09
TraesCS3A01G459700.1	Wheat	vacuole	92.51	93.86
HORVU3Hr1G098880.1	Barley	plasma membrane	81.27	82.22
TraesCS5B01G442500.1	Wheat	golgi	76.95	78.76
Zm00001d016901_P001	Maize	vacuole	59.94	59.94
Os02t0572300-00	Rice	nucleus, plastid	63.11	52.39
GSMUA_Achr8P09280_001	Banana	cytosol	5.76	41.67
TraesCS5B01G245800.1	Wheat	plasma membrane	31.7	27.78
TraesCS2B01G336300.1	Wheat	extracellular, golgi, plasma membrane	29.97	27.37
TraesCS3B01G549900.1	Wheat	vacuole	24.21	26.67
TraesCS7B01G475300.1	Wheat	endoplasmic reticulum, plasma membrane	14.7	26.56
TraesCS6B01G346000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	30.26	26.12
TraesCS6B01G151000.1	Wheat	extracellular, golgi, plasma membrane	29.97	25.74
TraesCS2B01G529100.1	Wheat	plastid	14.41	25.38
KRH38505	Soybean	plasma membrane, vacuole	20.46	24.91
TraesCS7B01G081700.1	Wheat	golgi	28.53	23.91
TraesCS3B01G060000.1	Wheat	mitochondrion	15.85	23.61
TraesCS4B01G304400.1	Wheat	plasma membrane	22.77	22.25
KRH13267	Soybean	plasma membrane	10.37	22.09
TraesCS4B01G199100.1	Wheat	plastid	25.65	19.91
TraesCS7B01G327800.1	Wheat	plastid	16.71	14.43
TraesCS1B01G479700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	17.58	14.12

Protein Annotations

EnsemblPlants:TraesCS3B01G499500.1	EnsemblPlantsGene:TraesCS3B01G499500	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF434	PFAM:PF13639	PFscan:PS50089	PFscan:PS51257
SEG:seg	SignalP:SignalP-TM	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	TMHMM:TMhelix
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:744310756..744311799

Molecular Weight (calculated)

37468.4 Da

IEP (calculated)

6.150

GRAVY (calculated)

-0.294

Length

347 amino acids

Sequence
(BLAST)

001: MAASGKRSLA AVVLSAIASC AAAQTPGGPG SHNNSMSLSD VMAILFFMAF FFPVFVVLLA FACLRLFRPP DEPPAGDDSS SDRSLHKEGL NAAEIAALPL
101: VSYRDVRQHR IGASGIDSLE CAVCLLEFGD DDSLRLLPAC PHAFHPECIG LWLAKHVTCP LCRASVLDPP VLDPEELLQP PSPEEETPVP HDSPRRLADH
201: DTVVVLIEDP GRDEEEDERT RILARRMRCE AAGRPALPRS NSTGHERAGG TEHFALRLPE HVRLEILMSH RLRHVTSAVA SVRVREGSAH DPSAGGNSVR
301: SAVARLLSLF APGDGRKGDD EEKSGGSSRR RRDDSARGAG EDKLRND

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.