Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 92.79 | 92.1 |
| TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 90.55 | 89.88 |
| HORVU6Hr1G077610.1 | Barley | plasma membrane | 90.05 | 89.16 |
| OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 60.95 | 57.92 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 59.7 | 57.83 |
| Zm00001d018122_P001 | Maize | vacuole | 59.7 | 57.28 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 59.45 | 54.69 |
| TraesCS7B01G081700.1 | Wheat | golgi | 42.04 | 40.82 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 34.83 | 35.35 |
| AT4G09100.1 | Thale cress | extracellular | 11.19 | 34.09 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 33.33 | 33.17 |
| KRG92822 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 27.36 | 32.74 |
| KRH33975 | Soybean | golgi, plasma membrane, vacuole | 29.1 | 32.59 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 24.88 | 31.75 |
| Bra010641.1-P | Field mustard | extracellular, golgi | 24.13 | 31.49 |
| CDX90377 | Canola | extracellular, golgi | 24.13 | 31.49 |
| CDY39477 | Canola | extracellular | 24.13 | 31.29 |
| KRH52998 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 25.62 | 30.84 |
| KRG96857 | Soybean | vacuole | 28.61 | 30.67 |
| TraesCS2B01G336300.1 | Wheat | extracellular, golgi, plasma membrane | 28.86 | 30.53 |
| CDX82175 | Canola | extracellular | 17.66 | 30.34 |
| KRH68588 | Soybean | plasma membrane | 27.61 | 30.33 |
| TraesCS3B01G499500.1 | Wheat | vacuole | 26.12 | 30.26 |
| TraesCS5B01G442500.1 | Wheat | golgi | 25.37 | 30.09 |
| KRH62285 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 25.37 | 30.0 |
| KRH72413 | Soybean | cytosol, golgi, vacuole | 27.86 | 29.95 |
| KRH16796 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 28.11 | 29.82 |
| TraesCS7B01G475300.1 | Wheat | endoplasmic reticulum, plasma membrane | 14.18 | 29.69 |
| Bra036631.1-P | Field mustard | plasma membrane | 25.62 | 29.43 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 25.62 | 29.43 |
| CDX99986 | Canola | plasma membrane | 25.37 | 29.23 |
| CDY25038 | Canola | plasma membrane | 26.87 | 29.19 |
| Bra038386.1-P | Field mustard | extracellular | 9.95 | 28.99 |
| CDX75097 | Canola | extracellular | 9.95 | 28.99 |
| CDY48058 | Canola | extracellular | 9.95 | 28.99 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 26.12 | 28.53 |
| CDY53236 | Canola | plasma membrane | 24.63 | 28.53 |
| CDY05577 | Canola | plasma membrane | 26.87 | 28.27 |
| AT4G40070.1 | Thale cress | extracellular, golgi, mitochondrion, plastid | 22.64 | 28.17 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 21.89 | 28.11 |
| Bra009960.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 21.14 | 27.96 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 21.14 | 27.96 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 25.37 | 27.72 |
| Bra009962.1-P | Field mustard | mitochondrion, plastid | 19.65 | 27.62 |
| Bra020591.1-P | Field mustard | plasma membrane | 26.12 | 27.56 |
| Bra005375.1-P | Field mustard | cytosol, nucleus, plastid | 21.39 | 27.48 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 21.39 | 27.48 |
| Bra005374.1-P | Field mustard | plasma membrane, plastid, vacuole | 25.12 | 27.45 |
| CDY18787 | Canola | plasma membrane | 26.37 | 27.39 |
| CDX86163 | Canola | plasma membrane | 20.4 | 27.33 |
| Bra039454.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 26.12 | 27.2 |
| PGSC0003DMT400046825 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 26.87 | 27.14 |
| Solyc03g112340.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 26.87 | 27.14 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 23.88 | 27.04 |
| Bra040642.1-P | Field mustard | plasma membrane | 25.87 | 26.94 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 24.63 | 26.9 |
| AT3G05200.1 | Thale cress | plasma membrane | 26.62 | 26.88 |
| AT2G34990.2 | Thale cress | plasma membrane | 21.64 | 26.85 |
| AT1G35330.1 | Thale cress | endoplasmic reticulum | 21.89 | 26.83 |
| Bra003887.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 23.63 | 26.46 |
| CDX80653 | Canola | plasma membrane | 19.9 | 26.4 |
| PGSC0003DMT400005472 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 25.62 | 26.34 |
| VIT_14s0128g00120.t01 | Wine grape | plasma membrane, plastid, vacuole | 27.36 | 26.19 |
| VIT_18s0001g06670.t01 | Wine grape | extracellular, plasma membrane, vacuole | 25.87 | 26.13 |
| CDY70284 | Canola | plasma membrane | 25.12 | 25.96 |
| TraesCS2B01G529100.1 | Wheat | plastid | 12.69 | 25.89 |
| CDY62007 | Canola | golgi, plasma membrane | 24.13 | 25.8 |
| AT4G09120.1 | Thale cress | plasma membrane | 22.14 | 25.8 |
| TraesCS3B01G060000.1 | Wheat | mitochondrion | 14.93 | 25.75 |
| PGSC0003DMT400073575 | Potato | extracellular, plasma membrane | 27.61 | 25.64 |
| Bra040855.1-P | Field mustard | golgi, plasma membrane | 23.88 | 25.53 |
| CDY21367 | Canola | golgi, plasma membrane | 23.88 | 25.53 |
| Solyc04g074820.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 24.88 | 25.45 |
| AT2G35000.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 23.88 | 25.4 |
| CDY05049 | Canola | plasma membrane | 18.41 | 25.34 |
| CDX82176 | Canola | extracellular | 22.89 | 25.21 |
| Solyc12g087860.1.1 | Tomato | vacuole | 23.38 | 25.2 |
| Bra000673.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 21.14 | 25.07 |
| Bra008016.1-P | Field mustard | plasma membrane | 24.88 | 24.81 |
| CDY03651 | Canola | plasma membrane | 24.88 | 24.81 |
| PGSC0003DMT400045807 | Potato | plasma membrane | 23.13 | 24.6 |
| AT4G09110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 18.41 | 24.5 |
| KRH16794 | Soybean | plasma membrane | 23.88 | 24.49 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 20.65 | 24.48 |
| Bra012330.1-P | Field mustard | golgi, plasma membrane | 20.9 | 24.42 |
| AT4G09130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 21.64 | 24.37 |
| AT1G72200.1 | Thale cress | plasma membrane | 24.38 | 24.26 |
| Bra008015.1-P | Field mustard | plasma membrane | 23.63 | 23.99 |
| CDY03652 | Canola | plasma membrane | 23.63 | 23.99 |
| CDX82179 | Canola | plasma membrane | 20.65 | 23.65 |
| KRH72412 | Soybean | nucleus, plasma membrane, plastid | 22.64 | 23.58 |
| AT1G22500.1 | Thale cress | plasma membrane | 22.14 | 23.36 |
| CDY03116 | Canola | plasma membrane | 19.9 | 22.66 |
| CDY12022 | Canola | plasma membrane | 19.9 | 22.66 |
| Bra028075.1-P | Field mustard | plasma membrane | 19.65 | 22.38 |
| Bra001139.1-P | Field mustard | extracellular, golgi, plasma membrane | 18.41 | 21.26 |
| TraesCS4B01G199100.1 | Wheat | plastid | 22.89 | 20.58 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 15.42 | 20.46 |
| CDY05145 | Canola | plasma membrane | 13.93 | 18.86 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 13.68 | 18.27 |
| TraesCS7B01G327800.1 | Wheat | plastid | 17.66 | 17.66 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 10.2 | 17.23 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 10.2 | 17.23 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 16.92 | 15.74 |
| CDY50446 | Canola | mitochondrion | 8.46 | 14.23 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G346000.1 | EnsemblPlantsGene:TraesCS6B01G346000 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF263 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SignalP:SignalP-TM | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16461 | TMHMM:TMhelix | MapMan:19.2.2.1.5.3.3 |
Description
No Description!
Coordinates
chr6B:-:609854033..609855241
Molecular Weight (calculated)
43294.3 Da
IEP (calculated)
9.790
GRAVY (calculated)
-0.326
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHALLAALL VCALASAGSA QPAEPGQGGY DNDVADQDMR ISTTMIVLLA AVVAVFFFIL ASIIYLRHCT GYSYPRAPRP DDSRGSGPGA GFSSFIARRQ
101: QRRAATRGLA AEVVEAFPTM RYAEAKALRV GKKAAPPLEC AVCLSEFEDE DRLRLLPKCS HAFHPECIGV WLASHVTCPV CRRNLDPSKD GGSDDEASTP
201: PAPEANSTSS EIAVVRHHQA EGSRPPAVVI DVVTEEEAEQ RRKEAIELQR IGTQRRAMRS GSRPAGTKAA KLVRSYSAGH SLAVVRLDRD LERFTLRLPE
301: HVRREMIAAA GERSSHRRAQ RAGRWPSFLR YTRTLSGRFF STPRRTESSG GGEASSSSST RIRGKRVAAV DFVEGSAVGG GVSGAKVGSV AVDVDKDKAA
401: SR
101: QRRAATRGLA AEVVEAFPTM RYAEAKALRV GKKAAPPLEC AVCLSEFEDE DRLRLLPKCS HAFHPECIGV WLASHVTCPV CRRNLDPSKD GGSDDEASTP
201: PAPEANSTSS EIAVVRHHQA EGSRPPAVVI DVVTEEEAEQ RRKEAIELQR IGTQRRAMRS GSRPAGTKAA KLVRSYSAGH SLAVVRLDRD LERFTLRLPE
301: HVRREMIAAA GERSSHRRAQ RAGRWPSFLR YTRTLSGRFF STPRRTESSG GGEASSSSST RIRGKRVAAV DFVEGSAVGG GVSGAKVGSV AVDVDKDKAA
401: SR
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Arabidopsis Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.