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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • plasma membrane 4
  • extracellular 2
  • endoplasmic reticulum 3
  • vacuole 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:plasma membrane
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:endoplasmic reticulum
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G72200.1 Bra002403.1-P AT5G22290.1 21798944
AT1G72200.1 Bra006619.1-P AT5G22290.1 21798944
AT1G72200.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY03652 Canola plasma membrane 100.0 100.0
Bra008016.1-P Field mustard plasma membrane 74.75 73.45
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 65.4 72.14
AT1G72200.1 Thale cress plasma membrane 66.92 65.59
Bra040855.1-P Field mustard golgi, plasma membrane 52.78 55.59
Bra012330.1-P Field mustard golgi, plasma membrane 47.73 54.94
KRH52998 Soybean endoplasmic reticulum, extracellular, plasma membrane 31.06 36.83
KRH62285 Soybean endoplasmic reticulum, plasma membrane, vacuole 31.31 36.47
KRH72413 Soybean cytosol, golgi, vacuole 33.33 35.29
KRH16796 Soybean cytosol, endoplasmic reticulum, plasma membrane, plastid 32.58 34.04
VIT_18s0001g06670.t01 Wine grape extracellular, plasma membrane, vacuole 33.08 32.91
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 29.29 31.52
Bra036631.1-P Field mustard plasma membrane 27.78 31.43
Bra038386.1-P Field mustard extracellular 10.86 31.16
Bra009962.1-P Field mustard mitochondrion, plastid 22.47 31.12
Bra011991.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 11.11 30.99
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 23.74 30.92
Bra010641.1-P Field mustard extracellular, golgi 23.99 30.84
GSMUA_Achr6P30500_001 Banana plasma membrane 22.73 30.82
HORVU4Hr1G022090.1 Barley endoplasmic reticulum, golgi, plasma membrane 16.16 30.19
GSMUA_Achr5P17910_001 Banana golgi, plasma membrane, vacuole 25.76 29.57
PGSC0003DMT400005472 Potato endoplasmic reticulum, plasma membrane, vacuole 29.04 29.41
Bra040642.1-P Field mustard plasma membrane 28.54 29.27
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 25.0 29.2
KRH72412 Soybean nucleus, plasma membrane, plastid 28.28 29.02
GSMUA_Achr7P12810_001 Banana endoplasmic reticulum, plasma membrane, vacuole 22.22 28.85
GSMUA_Achr3P20400_001 Banana mitochondrion 25.0 28.78
Solyc04g074820.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 28.54 28.75
KRH16794 Soybean plasma membrane 28.03 28.32
Zm00001d005936_P001 Maize plasma membrane 27.78 27.99
Solyc12g087860.1.1 Tomato vacuole 26.26 27.88
TraesCS5D01G254900.1 Wheat golgi, plasma membrane 27.53 27.81
Os09t0468300-00 Rice golgi, plasma membrane 27.02 27.65
Bra020591.1-P Field mustard plasma membrane 26.52 27.56
PGSC0003DMT400045807 Potato plasma membrane 26.26 27.51
GSMUA_AchrUn_... Banana golgi, plasma membrane 24.49 27.48
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 26.77 27.46
Bra005375.1-P Field mustard cytosol, nucleus, plastid 21.46 27.16
HORVU5Hr1G069980.1 Barley plasma membrane 26.26 27.08
TraesCS5B01G245800.1 Wheat plasma membrane 27.02 27.02
TraesCS5A01G248100.1 Wheat plasma membrane 27.02 26.95
EER99041 Sorghum endoplasmic reticulum, plasma membrane 27.78 26.7
GSMUA_Achr3P06680_001 Banana mitochondrion, plastid 26.01 26.55
GSMUA_AchrUn_... Banana plastid 23.99 26.39
Bra028075.1-P Field mustard plasma membrane 23.23 26.06
Zm00001d031261_P001 Maize golgi 24.75 25.99
GSMUA_Achr9P15010_001 Banana endoplasmic reticulum, plasma membrane 23.48 25.98
Zm00001d020789_P001 Maize plasma membrane 26.01 25.88
GSMUA_Achr10P... Banana plasma membrane 25.25 25.77
TraesCS3D01G495500.1 Wheat vacuole 24.75 25.39
TraesCS4B01G304400.1 Wheat plasma membrane 22.47 25.07
TraesCS6B01G151000.1 Wheat extracellular, golgi, plasma membrane 25.51 25.0
HORVU4Hr1G078260.1 Barley plasma membrane 22.47 24.93
EER92732 Sorghum golgi 22.98 24.73
TraesCS6D01G294800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 25.25 24.69
TraesCS6D01G113000.1 Wheat golgi 25.0 24.69
TraesCS6A01G122800.1 Wheat endoplasmic reticulum, golgi, mitochondrion 25.25 24.63
TraesCS4D01G302600.1 Wheat plasma membrane 21.97 24.51
Os08t0484200-01 Rice golgi 25.51 24.46
EES18560 Sorghum golgi, plasma membrane 24.24 24.43
Os03t0188200-01 Rice golgi 21.72 24.36
Zm00001d027983_P001 Maize plasma membrane, plastid 22.22 24.31
HORVU6Hr1G022590.1 Barley golgi, mitochondrion 24.75 24.26
TraesCS4A01G404600.1 Wheat plasma membrane 21.72 24.23
TraesCS3B01G549900.1 Wheat vacuole 19.19 24.13
HORVU4Hr1G080840.1 Barley cytosol 14.39 24.05
Bra025008.1-P Field mustard plastid 17.42 24.04
Bra017535.1-P Field mustard nucleus, plasma membrane, plastid 16.92 23.84
Bra013268.1-P Field mustard plasma membrane 17.68 23.81
TraesCS6A01G315600.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 24.24 23.7
TraesCS6B01G346000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 23.99 23.63
Zm00001d052189_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 24.75 23.61
TraesCS7A01G176700.1 Wheat golgi 24.75 23.61
OQU85775 Sorghum golgi, plasma membrane, vacuole 25.0 23.4
TraesCS7D01G178000.1 Wheat golgi 23.99 23.28
Zm00001d037192_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 24.75 23.28
TraesCS7B01G081700.1 Wheat golgi 23.99 22.95
Zm00001d018122_P001 Maize vacuole 24.24 22.91
HORVU6Hr1G077610.1 Barley plasma membrane 23.48 22.91
Os06t0218300-01 Rice endoplasmic reticulum, extracellular, golgi 25.51 22.85
Zm00001d048230_P001 Maize golgi 21.46 22.37
Os02t0759400-01 Rice endoplasmic reticulum, golgi, mitochondrion, plastid 23.99 21.74
TraesCS4A01G104900.1 Wheat mitochondrion 20.96 21.45
KXG39223 Sorghum golgi, plasma membrane, plastid, vacuole 20.71 21.19
Os03t0391100-00 Rice endoplasmic reticulum, golgi 23.23 21.15
Zm00001d029395_P001 Maize plasma membrane, plastid 20.2 20.89
HORVU4Hr1G057610.1 Barley plastid 21.72 20.87
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 18.18 20.69
TraesCS4D01G200100.1 Wheat plastid 20.96 20.05
Bra005343.1-P Field mustard plastid 13.38 19.0
TraesCS4B01G199100.1 Wheat plastid 21.21 18.79
HORVU7Hr1G036380.2 Barley endoplasmic reticulum 19.7 18.75
OQU76061 Sorghum cytosol, peroxisome, plasma membrane 25.76 18.72
Bra017320.1-P Field mustard extracellular, nucleus, plasma membrane 14.14 16.67
Bra011068.1-P Field mustard endoplasmic reticulum, plasma membrane 17.17 16.31
Bra010349.1-P Field mustard endoplasmic reticulum, plasma membrane 17.17 16.19
Bra009136.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 16.16 15.84
Bra024178.1-P Field mustard endoplasmic reticulum, plasma membrane 16.67 15.71
Bra012630.1-P Field mustard nucleus 17.17 10.99
Protein Annotations
EnsemblPlants:Bra008015.1EnsemblPlants:Bra008015.1-PEnsemblPlantsGene:Bra008015Gene3D:3.30.40.10GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155
PANTHER:PTHR14155:SF414PFAM:PF13639PFscan:PS50089SEG:segSignalP:SignalP-noTMSMART:SM00184
SUPFAM:SSF57850TMHMM:TMhelixUniParc:UPI0002546FE9UniProt:M4CUX0MapMan:19.2.2.1.5.3.3:
Description
AT1G72200 (E=7e-132) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA02:-:12548493..12549683
Molecular Weight (calculated)
44650.1 Da
IEP (calculated)
6.084
GRAVY (calculated)
-0.270
Length
396 amino acids
Sequence
(BLAST)
001: MDWRLIKPAK AWSMDPRGLT RSITGHHGSI LQLHLCLLLF SGHTSAQATD GDSDMYGESF RLDPNMVILM IVLVSVFFTL GFFSICIRKW LERVTGMNNA
101: NSVGAGGNRF SLSRPQARGI DASVIETFPT FRYSTVKMLM IIKEALECPI CLNEFEDEET LRLIPKCCHV FHPDCIDAWF QSHATCPLCR ANLVPVLGET
201: VVSIQIPGLA DGAPGSELTG DRTTVLGSPD ARLIDSVALT CNQSMPRRSM STGWNLAGIF TNSGWTGQHE ENLDRFTLRL PRDIHNKLVD PSFSKCHVTF
301: PQMMSSARGY RTGNLETDAN YFYYERFDQD DRFDQDDWFD QDGRLDRRPF SITPPYRTCS IKSPFDWLCL EKNNIGERSS DHLRSGHDSP SVDQVV
Best Arabidopsis Sequence Match ( AT1G72200.1 )
(BLAST)
001: MNPKGRTNLN RSIIGGHDHG SILQLLLFLL LLSSHGGFKF VAGQATHGGS DVSGDSSRFD PTMAILMIVL VSVFFFLGFF SVYIRRCLER VMGMDYGNPN
101: DAGNWLATNR QQARGLDASI IETFPTFQYS TVKTLRIGKE ALECSVCLNE FEDDETLRLI PKCCHVFHPG CIDAWLRSHT TCPLCRADLI PVPGESIVSI
201: QIPGLVNDPP GSDPNGDRIR SLGSPDARLI ESVALTCNQS MPRRSMSTGW NLAGMFTNSD RTGQHSENLD RFTLRLPQDI HNKLVNPNLS KVHVALPQVM
301: SSTRGYRTGS LGSERNYFYY ERFDQDGRLD RRPFSITPPY RTSSINHMSP GGSGGDKVRA SSPKSLLLAM RSPFDRLFLG KNNNVGENSS DHLRSCDATP
401: SNTV
Arabidopsis Description
ATL11RING-H2 finger protein ATL11 [Source:UniProtKB/Swiss-Prot;Acc:Q84W40]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.