Factsheet for Bra005343.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G35420.1	Thale cress	plasma membrane, plastid	59.5	65.35
Bra017320.1-P	Field mustard	extracellular, nucleus, plasma membrane	74.55	61.9
TraesCS1A01G192600.1	Wheat	plastid	22.94	30.33
Os10t0574400-01	Rice	mitochondrion, plasma membrane, plastid	21.15	29.65
KRH53320	Soybean	mitochondrion	10.75	28.3
OQU92087	Sorghum	golgi, peroxisome, plastid	24.73	27.71
Zm00001d030038_P001	Maize	plastid	22.94	27.59
Bra011991.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	13.98	27.46
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	15.41	25.6
GSMUA_Achr4P12270_001	Banana	plastid	15.77	25.43
Bra038386.1-P	Field mustard	extracellular	12.19	24.64
KRH14610	Soybean	endoplasmic reticulum, nucleus, plastid	12.54	19.89
Bra017535.1-P	Field mustard	nucleus, plasma membrane, plastid	19.35	19.22
Bra025008.1-P	Field mustard	plastid	19.71	19.16
Bra013268.1-P	Field mustard	plasma membrane	20.07	19.05
Bra000673.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	21.15	17.4
Bra010641.1-P	Field mustard	extracellular, golgi	19.0	17.21
Bra036631.1-P	Field mustard	plasma membrane	20.07	16.0
KRH31340	Soybean	endoplasmic reticulum, plasma membrane	12.9	16.0
Bra005375.1-P	Field mustard	cytosol, nucleus, plastid	17.92	15.97
Bra040642.1-P	Field mustard	plasma membrane	21.51	15.54
Bra009960.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	16.49	15.13
Bra020591.1-P	Field mustard	plasma membrane	20.43	14.96
Bra028075.1-P	Field mustard	plasma membrane	18.64	14.73
Bra009962.1-P	Field mustard	mitochondrion, plastid	14.7	14.34
Bra039454.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	19.71	14.25
Bra012330.1-P	Field mustard	golgi, plasma membrane	17.56	14.24
Bra005374.1-P	Field mustard	plasma membrane, plastid, vacuole	18.64	14.13
Bra040855.1-P	Field mustard	golgi, plasma membrane	18.64	13.83
Bra008015.1-P	Field mustard	plasma membrane	19.0	13.38
Bra003887.1-P	Field mustard	endoplasmic reticulum, plasma membrane	17.2	13.37
Bra008016.1-P	Field mustard	plasma membrane	19.0	13.15
Bra010349.1-P	Field mustard	endoplasmic reticulum, plasma membrane	18.64	12.38
Bra011068.1-P	Field mustard	endoplasmic reticulum, plasma membrane	18.28	12.23
Bra024178.1-P	Field mustard	endoplasmic reticulum, plasma membrane	16.49	10.95
Bra009136.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	15.41	10.64
Bra012630.1-P	Field mustard	nucleus	20.79	9.37
Bra001139.1-P	Field mustard	extracellular, golgi, plasma membrane	11.47	9.2

Protein Annotations

EnsemblPlants:Bra005343.1	EnsemblPlants:Bra005343.1-P	EnsemblPlantsGene:Bra005343	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF305	PFAM:PF13639	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI0002547E4A	UniProt:M4CMA5	MapMan:19.2.2.1.5.3.3	:	:

Description

AT2G35420 (E=5e-088) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA05:+:4935816..4936655

Molecular Weight (calculated)

31586.8 Da

IEP (calculated)

8.070

GRAVY (calculated)

-0.138

Length

279 amino acids

Sequence
(BLAST)

001: MASTTTSTTI PATEVFPSVT MPITVALTCV LLLVLVCGFI TLFFWKCFLH RLFSAWTRQR TPYGDLIRVT TPPENIGLDP FIIKSFPVFL YSSSTMKNQC
101: TECAICLSEF SDEDTVRLIT VCRHGFHSIC IDLWFESHKT CPVCRCELDP GLVGSGSHES LHSTVTITIQ DLNHDQENPR SASSSKRLTR FSRSHSTGHF
201: MVKMTDVNVK IKRRQYYQTG DSVMLEENAP STSTSSSKRL REASAWRFSR SHSTGHFMGK AMYLNELTRY EGVEYGMAW

Best Arabidopsis Sequence Match ( AT2G35420.1 )
(BLAST)

001: MSSTTSIDSI PATAVFPSVS MPVTVVLTGV LLFVIFAGFF SLFLWQFLLN RLFTTWNLQR TPYGDLIHVA TPPENTGLDP FIIRSFPVFH YSSATKKNHG
101: TECAICLSEF SDEDTVRLIT VCRHPFHSNC IDLWFELHKT CPVCRCELDP GMIGSGRLES FHNTVTITIQ DINHDEENPP TAGSSKRLIE ASAWRFSRSH
201: STGHFMVKTT DANVKSKRRH YQTGSCVSFD ELTRYEGAGW QWLGDSSHIS RIEV

Arabidopsis Description

ATL28RING-H2 finger protein ATL28 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKR1]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.