Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62419 | Canola | cytosol | 43.7 | 74.0 |
| Bra005343.1-P | Field mustard | plastid | 65.35 | 59.5 |
| Bra017320.1-P | Field mustard | extracellular, nucleus, plasma membrane | 70.08 | 52.98 |
| TraesCS1A01G192600.1 | Wheat | plastid | 25.2 | 30.33 |
| Os10t0574400-01 | Rice | mitochondrion, plasma membrane, plastid | 22.44 | 28.64 |
| AT4G09100.1 | Thale cress | extracellular | 14.57 | 28.03 |
| OQU92087 | Sorghum | golgi, peroxisome, plastid | 27.17 | 27.71 |
| Zm00001d030038_P001 | Maize | plastid | 25.2 | 27.59 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 17.72 | 26.79 |
| GSMUA_Achr4P12270_001 | Banana | plastid | 18.11 | 26.59 |
| KRH53320 | Soybean | mitochondrion | 11.02 | 26.42 |
| KRH14610 | Soybean | endoplasmic reticulum, nucleus, plastid | 13.78 | 19.89 |
| AT4G17920.1 | Thale cress | plasma membrane | 22.05 | 19.38 |
| AT4G40070.1 | Thale cress | extracellular, golgi, mitochondrion, plastid | 23.23 | 18.27 |
| AT5G46650.1 | Thale cress | plasma membrane | 20.47 | 17.99 |
| AT4G09110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 19.29 | 16.23 |
| KRH31340 | Soybean | endoplasmic reticulum, plasma membrane | 14.17 | 16.0 |
| AT2G27940.1 | Thale cress | plasma membrane | 14.57 | 15.61 |
| AT4G09120.1 | Thale cress | plasma membrane | 20.87 | 15.36 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 22.05 | 15.22 |
| AT2G34990.2 | Thale cress | plasma membrane | 19.29 | 15.12 |
| AT1G22500.1 | Thale cress | plasma membrane | 22.44 | 14.96 |
| AT1G72200.1 | Thale cress | plasma membrane | 23.62 | 14.85 |
| AT1G35330.1 | Thale cress | endoplasmic reticulum | 18.9 | 14.63 |
| AT2G35000.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 21.65 | 14.55 |
| AT3G05200.1 | Thale cress | plasma membrane | 22.44 | 14.32 |
| AT4G09130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 18.9 | 13.45 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 18.11 | 11.79 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 18.11 | 11.3 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 18.11 | 10.65 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:818108 | ProteinID:AAC36179.1 | ProteinID:AEC09107.1 | ArrayExpress:AT2G35420 |
| EnsemblPlantsGene:AT2G35420 | RefSeq:AT2G35420 | TAIR:AT2G35420 | RefSeq:AT2G35420-TAIR-G | EnsemblPlants:AT2G35420.1 | TAIR:AT2G35420.1 |
| Unigene:At.66436 | EMBL:BT012632 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_181085.2 | PFAM:PF13639 | PO:PO:0000293 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF305 |
| UniProt:Q6NKR1 | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000034EE0C | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
ATL28RING-H2 finger protein ATL28 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKR1]
Coordinates
chr2:-:14899715..14900692
Molecular Weight (calculated)
28625.0 Da
IEP (calculated)
6.781
GRAVY (calculated)
-0.092
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTTSIDSI PATAVFPSVS MPVTVVLTGV LLFVIFAGFF SLFLWQFLLN RLFTTWNLQR TPYGDLIHVA TPPENTGLDP FIIRSFPVFH YSSATKKNHG
101: TECAICLSEF SDEDTVRLIT VCRHPFHSNC IDLWFELHKT CPVCRCELDP GMIGSGRLES FHNTVTITIQ DINHDEENPP TAGSSKRLIE ASAWRFSRSH
201: STGHFMVKTT DANVKSKRRH YQTGSCVSFD ELTRYEGAGW QWLGDSSHIS RIEV
101: TECAICLSEF SDEDTVRLIT VCRHPFHSNC IDLWFELHKT CPVCRCELDP GMIGSGRLES FHNTVTITIQ DINHDEENPP TAGSSKRLIE ASAWRFSRSH
201: STGHFMVKTT DANVKSKRRH YQTGSCVSFD ELTRYEGAGW QWLGDSSHIS RIEV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.