CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plastid

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030038_P001	Maize	plastid	81.12	87.07
TraesCS1A01G192600.1	Wheat	plastid	50.6	59.72
Os10t0574400-01	Rice	mitochondrion, plasma membrane, plastid	46.99	58.79
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	25.7	38.1
GSMUA_Achr4P12270_001	Banana	plastid	26.1	37.57
AT2G35420.1	Thale cress	plasma membrane, plastid	27.71	27.17
CDY62419	Canola	cytosol	15.66	26.0
Bra005343.1-P	Field mustard	plastid	27.71	24.73
KRH53320	Soybean	mitochondrion	10.44	24.53
PGSC0003DMT400001221	Potato	vacuole	16.87	22.46
OQU82489	Sorghum	plasma membrane, vacuole	18.88	19.83
Bra017320.1-P	Field mustard	extracellular, nucleus, plasma membrane	26.51	19.64
Solyc11g066510.1.1	Tomato	nucleus	18.47	19.49
KRH14610	Soybean	endoplasmic reticulum, nucleus, plastid	12.05	17.05
EER99041	Sorghum	endoplasmic reticulum, plasma membrane	26.51	16.02
EES18560	Sorghum	golgi, plasma membrane	24.9	15.78
KRH31340	Soybean	endoplasmic reticulum, plasma membrane	14.06	15.56
EER92732	Sorghum	golgi	22.09	14.95
EES05293	Sorghum	endoplasmic reticulum, golgi, plastid	21.69	14.29
KXG26428	Sorghum	plasma membrane	23.29	14.29
KXG39223	Sorghum	golgi, plasma membrane, plastid, vacuole	21.69	13.95
OQU85775	Sorghum	golgi, plasma membrane, vacuole	21.69	12.77
OQU76061	Sorghum	cytosol, peroxisome, plasma membrane	24.5	11.19
EER90301	Sorghum	endoplasmic reticulum, golgi, vacuole	17.27	10.7
EES18815	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	16.06	8.46

Protein Annotations

EnsemblPlants:OQU92087	EnsemblPlantsGene:SORBI_3001G288601	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF305
PFAM:PF13639	PFscan:PS50089	ProteinID:OQU92087	ProteinID:OQU92087.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000B4239B6	UniProt:A0A1Z5S844	MapMan:19.2.2.1.5.3.3	:

Description

hypothetical protein

Coordinates

chr1:-:56517276..56518025

Molecular Weight (calculated)

26128.0 Da

IEP (calculated)

7.384

GRAVY (calculated)

0.014

Length

249 amino acids

Sequence
(BLAST)

001: MDTVVLVATA ARRLLGDGTH DHRAHHGGGA SASPPRPGAA SVPLPARPPP RESFPMLLPV FILFVLLLCF LSIFLLRDLL HFFSLWLRRR RRLRAAGGSD
101: AASGAGASAS ADATPDAHAP HKPAGLDPAV LATFPTVRWF EETHQPAASG HAECAVCLSE FAAGDAVRLL TVCRHAFHTA CIDSWLGDHT TCPVCRSELD
201: APPATRRCGD GGRIAIVVDD HGASTAAVAD TDHATSPPAS GGVQSRPDR

Best Arabidopsis Sequence Match ( AT2G35420.1 )
(BLAST)

001: MSSTTSIDSI PATAVFPSVS MPVTVVLTGV LLFVIFAGFF SLFLWQFLLN RLFTTWNLQR TPYGDLIHVA TPPENTGLDP FIIRSFPVFH YSSATKKNHG
101: TECAICLSEF SDEDTVRLIT VCRHPFHSNC IDLWFELHKT CPVCRCELDP GMIGSGRLES FHNTVTITIQ DINHDEENPP TAGSSKRLIE ASAWRFSRSH
201: STGHFMVKTT DANVKSKRRH YQTGSCVSFD ELTRYEGAGW QWLGDSSHIS RIEV

Arabidopsis Description

ATL28RING-H2 finger protein ATL28 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKR1]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.