Factsheet for GSMUA_Achr4P12270_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	57.23	58.93
GSMUA_Achr8P09280_001	Banana	cytosol	9.25	33.33
Os10t0574400-01	Rice	mitochondrion, plasma membrane, plastid	35.84	31.16
TraesCS1A01G192600.1	Wheat	plastid	35.26	28.91
Zm00001d030038_P001	Maize	plastid	36.99	27.59
OQU92087	Sorghum	golgi, peroxisome, plastid	37.57	26.1
KRH53320	Soybean	mitochondrion	15.03	24.53
CDY62419	Canola	cytosol	16.76	19.33
PGSC0003DMT400001221	Potato	vacuole	20.81	19.25
AT2G35420.1	Thale cress	plasma membrane, plastid	26.59	18.11
Solyc11g066510.1.1	Tomato	nucleus	24.28	17.8
KRH14610	Soybean	endoplasmic reticulum, nucleus, plastid	17.34	17.05
Bra005343.1-P	Field mustard	plastid	25.43	15.77
GSMUA_Achr7P12810_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	27.17	15.41
GSMUA_Achr6P22700_001	Banana	plasma membrane	20.81	15.13
GSMUA_AchrUn_...	Banana	plastid	30.06	14.44
GSMUA_Achr6P30500_001	Banana	plasma membrane	24.28	14.38
GSMUA_Achr1P17360_001	Banana	nucleus, plasma membrane, plastid	20.81	14.29
GSMUA_Achr3P20400_001	Banana	mitochondrion	28.32	14.24
GSMUA_Achr5P17910_001	Banana	golgi, plasma membrane, vacuole	27.75	13.91
GSMUA_AchrUn_...	Banana	golgi, plasma membrane	28.32	13.88
GSMUA_Achr9P15010_001	Banana	endoplasmic reticulum, plasma membrane	27.75	13.41
Bra017320.1-P	Field mustard	extracellular, nucleus, plasma membrane	26.01	13.39
KRH31340	Soybean	endoplasmic reticulum, plasma membrane	17.34	13.33
GSMUA_Achr3P06680_001	Banana	mitochondrion, plastid	26.59	11.86
GSMUA_Achr10P...	Banana	plasma membrane	26.59	11.86
GSMUA_Achr4P08120_001	Banana	plasma membrane	23.12	11.14
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	23.12	10.87
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	23.12	10.42
GSMUA_Achr6P26720_001	Banana	plasma membrane	20.81	10.26
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	21.39	10.08
GSMUA_Achr9P00230_001	Banana	vacuole	20.81	9.78

Protein Annotations

EnsemblPlants:GSMUA_Achr4P12270_001	EnsemblPlants:GSMUA_Achr4T12270_001	EnsemblPlantsGene:GSMUA_Achr4G12270_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF231	PFAM:PF13639	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI000296B0B2	UniProt:M0SN92	MapMan:19.2.2.1.5.3.3	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G12270_001]

Coordinates

chr4:-:9078371..9078892

Molecular Weight (calculated)

18068.4 Da

IEP (calculated)

4.254

GRAVY (calculated)

0.192

Length

173 amino acids

Sequence
(BLAST)

001: MDSSYSTCFS LSSSASRRLL PPAAAPAPHS VTLSCDEYAV SKILAMVLCF LVIATIFYLA FAGPDSEEED EDEEEQREEL RGVKRAKPRG LDPAVLASLP
101: VAPYAEVAGE GTVGPECAVC LTEFGGGDAL RTMTGCGHGF HADCIDPWLA GHATCPVCRS DLAAACNVIV VGG

Best Arabidopsis Sequence Match ( AT2G35000.1 )
(BLAST)

001: MAILDTKSSR WIPHNLLFLL LLLLLQSVPY GFGQTQTTPP GTTKTKPNDP VVVVITVLFL VIFFMVFGSI FCRRSNAQFS RSSIFRSTDA DAESQVVRIR
101: RLTARGLDAE AIETFPTFLY SEVKAVRIGK GGVECAVCLC EFEDDETLRL MPPCCHVFHA DCVDVWLSEH STCPLCRADL VLNQQGDDDD STESYSGTDP
201: GTISSSTDPE RGMVLESSDA HLLDAVTWSN SNITPRSKST GLSSWQITGI LFPRSHSTGH SLIQPAGNLD RFTLRLPDDV RRQLMKTSRT MGHVALLPQA
301: RSSRSGYRSG SVGSERSAFP YGRKSNNNNR RLHSLSFSFS FRSGSVRSTF SGDAPKNLPT SIEAGERSFE RLRPDERV

Arabidopsis Description

ATL9E3 ubiquitin-protein ligase ATL9 [Source:UniProtKB/Swiss-Prot;Acc:O64763]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.