Factsheet for GSMUA_Achr6P26720_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	69.52	66.48
GSMUA_Achr9P00230_001	Banana	vacuole	59.26	56.52
GSMUA_Achr4P08120_001	Banana	plasma membrane	55.56	54.32
GSMUA_Achr8P09280_001	Banana	cytosol	5.98	43.75
Solyc05g018310.1.1	Tomato	extracellular, plasma membrane, vacuole	38.46	41.67
CDY05713	Canola	extracellular	17.38	41.5
PGSC0003DMT400070587	Potato	plastid	40.17	40.99
PGSC0003DMT400000810	Potato	plasma membrane	42.73	40.54
GSMUA_Achr6P22700_001	Banana	plasma membrane	27.07	39.92
Solyc12g007320.1.1	Tomato	plasma membrane	41.88	38.58
Os05t0596500-01	Rice	endoplasmic reticulum, plasma membrane	41.88	38.18
TraesCS1A01G444900.1	Wheat	golgi, plasma membrane	41.6	37.15
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	41.03	36.83
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	41.31	36.8
KRH62061	Soybean	plastid	27.92	36.16
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	39.89	34.4
AT2G20030.1	Thale cress	endoplasmic reticulum, plasma membrane	38.18	34.36
CDX97460	Canola	endoplasmic reticulum, extracellular, plasma membrane	39.89	34.31
KRH76331	Soybean	endoplasmic reticulum	41.6	34.27
KRH39345	Soybean	endoplasmic reticulum, vacuole	40.74	34.13
CDY66475	Canola	endoplasmic reticulum, plasma membrane	39.6	33.99
KRH16295	Soybean	plasma membrane	38.18	33.92
CDY06859	Canola	endoplasmic reticulum, plasma membrane	40.17	33.81
CDY50930	Canola	endoplasmic reticulum, plasma membrane	40.46	33.81
Bra024178.1-P	Field mustard	endoplasmic reticulum, plasma membrane	40.46	33.81
Bra010349.1-P	Field mustard	endoplasmic reticulum, plasma membrane	40.46	33.81
TraesCS1B01G479700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	41.6	33.8
CDY13888	Canola	plasma membrane	35.61	33.78
CDX92900	Canola	endoplasmic reticulum, plasma membrane	39.89	33.73
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	41.6	33.64
Bra011068.1-P	Field mustard	endoplasmic reticulum, plasma membrane	39.89	33.57
CDY35230	Canola	endoplasmic reticulum, plasma membrane	39.6	33.33
CDX81954	Canola	endoplasmic reticulum, plasma membrane, vacuole	36.18	33.16
CDY35921	Canola	endoplasmic reticulum, extracellular, plasma membrane	35.04	33.15
KRH52730	Soybean	golgi, plasma membrane, vacuole	38.46	32.93
EES18815	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	43.59	32.35
VIT_11s0016g03420.t01	Wine grape	plastid	43.02	32.2
AT4G28890.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	39.6	32.18
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	30.77	29.35
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	31.05	28.39
CDY05714	Canola	cytosol	15.38	25.35
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	9.97	20.83
GSMUA_Achr4P12270_001	Banana	plastid	10.26	20.81
GSMUA_Achr1P17360_001	Banana	nucleus, plasma membrane, plastid	14.53	20.24
GSMUA_Achr5P17910_001	Banana	golgi, plasma membrane, vacuole	19.09	19.42
GSMUA_AchrUn_...	Banana	plastid	19.66	19.17
GSMUA_Achr3P20400_001	Banana	mitochondrion	18.23	18.6
GSMUA_Achr7P12810_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	15.95	18.36
GSMUA_Achr6P30500_001	Banana	plasma membrane	15.1	18.15
GSMUA_Achr3P06680_001	Banana	mitochondrion, plastid	19.94	18.04
GSMUA_AchrUn_...	Banana	golgi, plasma membrane	17.95	17.85
GSMUA_Achr9P15010_001	Banana	endoplasmic reticulum, plasma membrane	16.52	16.2
GSMUA_Achr10P...	Banana	plasma membrane	17.66	15.98

Protein Annotations

EnsemblPlants:GSMUA_Achr6P26720_001	EnsemblPlants:GSMUA_Achr6T26720_001	EnsemblPlantsGene:GSMUA_Achr6G26720_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF220	PFAM:PF13639	PFscan:PS50089	SEG:seg	SignalP:SignalP-TM	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000294FFD4	UniProt:M0TAG7	MapMan:19.2.2.1.5.3.3	:

Description

Putative RING-H2 finger protein ATL12 [Source:GMGC_GENE;Acc:GSMUA_Achr6G26720_001]

Coordinates

chr6:+:27402749..27404240

Molecular Weight (calculated)

38860.1 Da

IEP (calculated)

7.408

GRAVY (calculated)

-0.143

Length

351 amino acids

Sequence
(BLAST)

001: MPFNTCDVSF ICFFFSAAVV AAQQTDSDTW TPSNVAVSFR PSVGIVIGIF TFMFSLTLLL LVYAKFCRSA AAPEPDSLGA DAAGHGRLIL PQHRFSGIDK
101: TVIESLPFFS FSSLRGVRDG LECSVCLSRF DDADVLRLLP KCKHAFHVGC VDRWLEAHSS CPLCRCKVEA DDAALFKYST SSRFLFPSDR LETSGRDLEL
201: FVERQPNDDG DPRGADGGRF FHKFKHKIIV SDVVFKSRWS DVNSSDLIAL NSEMLSGKTL ADSCSTALPS MSSNSAHDAN LNNTNSRALI SSGNRTMSEI
301: TNLSRFRQVK DPGSIGTTDE NEDEKVRRLW LPIAKRTVQW FAGREKRSPL V

Best Arabidopsis Sequence Match ( AT2G20030.1 )
(BLAST)

001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV

Arabidopsis Description

ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.