Factsheet for GSMUA_Achr1P17360_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09280_001	Banana	cytosol	7.94	41.67
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	13.89	20.83
GSMUA_Achr4P12270_001	Banana	plastid	14.29	20.81
GSMUA_Achr6P22700_001	Banana	plasma membrane	17.86	18.91
GSMUA_AchrUn_...	Banana	plastid	26.98	18.89
GSMUA_Achr9P15010_001	Banana	endoplasmic reticulum, plasma membrane	26.19	18.44
GSMUA_Achr3P20400_001	Banana	mitochondrion	25.0	18.31
GSMUA_AchrUn_...	Banana	golgi, plasma membrane	25.0	17.85
GSMUA_Achr5P17910_001	Banana	golgi, plasma membrane, vacuole	24.21	17.68
GSMUA_Achr6P30500_001	Banana	plasma membrane	20.24	17.47
GSMUA_Achr7P12810_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	21.03	17.38
GSMUA_Achr3P06680_001	Banana	mitochondrion, plastid	26.59	17.27
GSMUA_Achr10P...	Banana	plasma membrane	24.6	15.98
GSMUA_Achr6P26720_001	Banana	plasma membrane	20.24	14.53
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	21.03	14.44
GSMUA_Achr9P00230_001	Banana	vacuole	21.03	14.4
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	20.63	14.13
GSMUA_Achr4P08120_001	Banana	plasma membrane	19.84	13.93
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	21.03	13.8

Protein Annotations

EnsemblPlants:GSMUA_Achr1P17360_001	EnsemblPlants:GSMUA_Achr1T17360_001	EnsemblPlantsGene:GSMUA_Achr1G17360_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF274	PFAM:PF13639	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI0002953F28	UniProt:M0S0P4	MapMan:19.2.2.1.5.3.3	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G17360_001]

Coordinates

chr1:+:12928529..12929427

Molecular Weight (calculated)

27671.8 Da

IEP (calculated)

9.901

GRAVY (calculated)

0.079

Length

252 amino acids

Sequence
(BLAST)

001: MKPGNRRLLP NGGSPTPPPL PAVPGKAAAQ LYSSSNSMAV TALIILLAVF FFGFFSVYAH RFVSGLRRSE ARRWRARQQA ARRQRGSRFE AACGLDPSAV
101: LALPVLRYVG AGEGVGKEGC VVCLGEFEEK EWVKVIPRCG HVFHPSCIDA WLVSRGSCPI CRCSDVIASC STSSVLGLEA EGAAAKEAGR GVPAAHLQLV
201: TERMLLFLLL WRCWWSSKHL PMTAESIIIC RRCYRKQIAR TLQRVQFTPD VD

Best Arabidopsis Sequence Match ( AT2G27940.1 )
(BLAST)

001: METKHLRKLL QLYQACGGEQ ELTKTVQNVT SSPLTPTPPP QPPSALDSTM ALTIFILLVA LFFMGFFSVY FRHFADSSSS TVDISSMPRT RSSRMSPRRL
101: STSVVVSRPY SFRRGLDSQA VRSLPVYRYT KAAKQRNEDC VICLSDFEEG ETVKVIPHCG HVFHVDCVDT WLSSYVTCPL CRSNQLFSDK DLGMQEPPDQ
201: DSAEEHDTCD GVDTCVRRCS SCSSLGQRTG LERSLSL

Arabidopsis Description

ATL57RING-H2 finger protein ATL57 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.