Factsheet for GSMUA_Achr9P00230_001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P26720_001	Banana	plasma membrane	56.52	59.26
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	57.07	57.22
GSMUA_Achr4P08120_001	Banana	plasma membrane	49.73	50.97
GSMUA_Achr8P09280_001	Banana	cytosol	6.25	47.92
GSMUA_Achr6P22700_001	Banana	plasma membrane	28.8	44.54
PGSC0003DMT400070587	Potato	plastid	40.22	43.02
Solyc05g018310.1.1	Tomato	extracellular, plasma membrane, vacuole	36.68	41.67
PGSC0003DMT400000810	Potato	plasma membrane	39.13	38.92
CDY05713	Canola	extracellular	15.49	38.78
Solyc12g007320.1.1	Tomato	plasma membrane	38.59	37.27
Os05t0596500-01	Rice	endoplasmic reticulum, plasma membrane	37.5	35.84
KRH39345	Soybean	endoplasmic reticulum, vacuole	40.49	35.56
KRH76331	Soybean	endoplasmic reticulum	41.03	35.45
CDY13888	Canola	plasma membrane	35.05	34.86
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	36.68	34.53
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	36.96	34.52
VIT_11s0016g03420.t01	Wine grape	plastid	43.75	34.33
AT2G20030.1	Thale cress	endoplasmic reticulum, plasma membrane	36.14	34.1
TraesCS1A01G444900.1	Wheat	golgi, plasma membrane	36.41	34.1
Bra011068.1-P	Field mustard	endoplasmic reticulum, plasma membrane	38.59	34.05
CDY50930	Canola	endoplasmic reticulum, plasma membrane	38.86	34.05
Bra024178.1-P	Field mustard	endoplasmic reticulum, plasma membrane	38.86	34.05
CDY35230	Canola	endoplasmic reticulum, plasma membrane	38.32	33.81
CDY06859	Canola	endoplasmic reticulum, plasma membrane	38.32	33.81
CDX81954	Canola	endoplasmic reticulum, plasma membrane, vacuole	35.05	33.68
CDX92900	Canola	endoplasmic reticulum, plasma membrane	37.77	33.49
CDX97460	Canola	endoplasmic reticulum, extracellular, plasma membrane	36.96	33.33
AT4G28890.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	39.13	33.33
Bra010349.1-P	Field mustard	endoplasmic reticulum, plasma membrane	37.77	33.1
KRH16295	Soybean	plasma membrane	35.33	32.91
CDY35921	Canola	endoplasmic reticulum, extracellular, plasma membrane	33.15	32.88
CDY66475	Canola	endoplasmic reticulum, plasma membrane	36.41	32.76
KRH52730	Soybean	golgi, plasma membrane, vacuole	35.33	31.71
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	35.05	31.7
KRH62061	Soybean	plastid	23.1	31.37
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	36.68	31.11
TraesCS1B01G479700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	36.14	30.79
EES18815	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	38.32	29.81
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	30.43	29.17
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	29.08	29.08
CDY05714	Canola	cytosol	14.95	25.82
GSMUA_Achr5P17910_001	Banana	golgi, plasma membrane, vacuole	20.92	22.32
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	9.78	21.43
GSMUA_Achr1P17360_001	Banana	nucleus, plasma membrane, plastid	14.4	21.03
GSMUA_Achr6P30500_001	Banana	plasma membrane	16.58	20.89
GSMUA_Achr4P12270_001	Banana	plastid	9.78	20.81
GSMUA_AchrUn_...	Banana	plastid	20.11	20.56
GSMUA_Achr7P12810_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	16.85	20.33
GSMUA_Achr3P06680_001	Banana	mitochondrion, plastid	20.65	19.59
GSMUA_AchrUn_...	Banana	golgi, plasma membrane	18.75	19.55
GSMUA_Achr3P20400_001	Banana	mitochondrion	18.21	19.48
GSMUA_Achr10P...	Banana	plasma membrane	20.11	19.07
GSMUA_Achr9P15010_001	Banana	endoplasmic reticulum, plasma membrane	17.93	18.44

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSMUA_Achr9G00230_001	EnsemblPlants:GSMUA_Achr9P00230_001	EnsemblPlants:GSMUA_Achr9T00230_001	InterPro:IPR001841	InterPro:IPR013083	UniProt:M0TW80
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF95	SMART:SM00184	SUPFAM:SSF57850
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0002948D46	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Putative E3 ubiquitin-protein ligase ATL42 [Source:GMGC_GENE;Acc:GSMUA_Achr9G00230_001]

Coordinates

chr9:+:274217..275506

Molecular Weight (calculated)

41359.9 Da

IEP (calculated)

9.248

GRAVY (calculated)

-0.192

Length

368 amino acids

Sequence
(BLAST)

001: MPLLLSLDLL FLLVSVPAAF VAAQPSDANT WSQPDVTISF RPGVAVVIGI FAIMFSVTFL LLVYAKFCRS AASEFFGTAS AGHGEFLLPQ HRFSGIDKAA
101: VESLPLFRFS MLRGARDGLE CAVCLSRFGD ADVLRLLPRC KHAFHVDCVD RWFEAHSTCP LCRCKVDAED AELFKCSTSS RFLFSSDRHE DGLPDLELST
201: KEKEDLRTLE EGTNDAQPLH RFKHKIIVSD VMFKRRWSDV NASDLLSLKG KIATNEKILK IKKEMEKKRL LENKARRINS SNSVAMPSNT CANSRDVLSS
301: GERSMSEITN LPRFRMIRDA GSSGCAGAKD EKLRRIWLPI ARRTVQWFAG RERRSQTQYS RTKEVANV

Best Arabidopsis Sequence Match ( AT4G28890.1 )
(BLAST)

001: MYQIFFFFLP LLHSYASAQT PPPFRNGDLV ANFEPSLAVV TGVLAIMFAL TFVLLVYAKC CHIDLRSGSG DRRRHDRRLR QGIFFNRSTA SSDRFSGLDK
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV

Arabidopsis Description

ATL42E3 ubiquitin-protein ligase ATL42 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF85]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.