Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 2
- nucleus 1
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P09280_001 | Banana | cytosol | 9.66 | 47.92 |
| CDY05713 | Canola | extracellular | 21.43 | 34.69 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 44.54 | 28.8 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 39.92 | 27.07 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 35.29 | 25.93 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 39.08 | 25.34 |
| PGSC0003DMT400070587 | Potato | plastid | 36.13 | 25.0 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 36.55 | 24.23 |
| KRH62061 | Soybean | plastid | 27.31 | 23.99 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 35.71 | 22.97 |
| Os05t0596500-01 | Rice | endoplasmic reticulum, plasma membrane | 36.97 | 22.86 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 39.5 | 22.43 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 35.71 | 22.31 |
| KRH76331 | Soybean | endoplasmic reticulum | 39.08 | 21.83 |
| TraesCS1A01G444900.1 | Wheat | golgi, plasma membrane | 35.29 | 21.37 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 35.29 | 21.32 |
| GSMUA_Achr4P12270_001 | Banana | plastid | 15.13 | 20.81 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 35.71 | 20.78 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 35.29 | 20.59 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 33.61 | 20.51 |
| CDY13888 | Canola | plasma membrane | 31.51 | 20.27 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 39.5 | 20.04 |
| Bra010349.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 35.29 | 20.0 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 32.77 | 19.95 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 34.87 | 19.9 |
| Bra011068.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 34.87 | 19.9 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 31.93 | 19.84 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 30.67 | 19.68 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 34.45 | 19.66 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 13.87 | 19.64 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 35.29 | 19.44 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 35.29 | 19.35 |
| KRH52730 | Soybean | golgi, plasma membrane, vacuole | 33.19 | 19.27 |
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 32.77 | 19.16 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 34.45 | 18.98 |
| Bra024178.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 33.19 | 18.81 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 33.19 | 18.81 |
| KRH16295 | Soybean | plasma membrane | 30.25 | 18.23 |
| GSMUA_Achr9P13810_001 | Banana | golgi, mitochondrion, plastid, vacuole | 27.73 | 17.93 |
| GSMUA_Achr1P17360_001 | Banana | nucleus, plasma membrane, plastid | 18.91 | 17.86 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 31.09 | 17.83 |
| GSMUA_Achr3P05190_001 | Banana | endoplasmic reticulum, golgi, plastid | 28.57 | 17.71 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 34.87 | 17.55 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 20.59 | 16.78 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 23.11 | 15.94 |
| GSMUA_AchrUn_... | Banana | plastid | 22.69 | 15.0 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 21.43 | 14.83 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 21.85 | 14.53 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 21.43 | 14.45 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 23.53 | 14.43 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 17.65 | 13.77 |
| GSMUA_Achr10P... | Banana | plasma membrane | 21.43 | 13.14 |
| CDY05714 | Canola | cytosol | 2.94 | 3.29 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P22700_001 | EnsemblPlants:GSMUA_Achr6T22700_001 | EnsemblPlantsGene:GSMUA_Achr6G22700_001 | Gene3D:3.30.40.10 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 |
| PANTHER:PTHR14155:SF95 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI0002967766 | UniProt:M0T9B8 | MapMan:19.2.2.1.5.3.3 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G22700_001]
Coordinates
chr6:+:20962960..20963676
Molecular Weight (calculated)
27129.0 Da
IEP (calculated)
8.424
GRAVY (calculated)
0.199
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAIRATNPQ RKKEEAKTLP TRQHVFLPCF DVLLFLLLIS APVRVAVQPS DGSTWSLLDA TFSFWPSLAM VVGIFTVMFS VTFLLLVYVK FCRFTVVELS
101: RNDGFLLPQC RFSGINKAAV ESLLVFWFSG LRDAWDGLEC IVCLFRFDGA ELLRLLPRCK HAFHIDCIDR WLAAHSTCPP CRRKVNAEDD NAVFEYFTSS
201: RFLFASCRHE EAVNYVDRVG RSFRKINIPA EGTNRAQA
101: RNDGFLLPQC RFSGINKAAV ESLLVFWFSG LRDAWDGLEC IVCLFRFDGA ELLRLLPRCK HAFHIDCIDR WLAAHSTCPP CRRKVNAEDD NAVFEYFTSS
201: RFLFASCRHE EAVNYVDRVG RSFRKINIPA EGTNRAQA
001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
Arabidopsis Description
ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.