Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05713 | Canola | extracellular | 31.79 | 84.35 |
| CDY13888 | Canola | plasma membrane | 71.79 | 75.68 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 71.79 | 75.47 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 71.28 | 72.58 |
| CDY05714 | Canola | cytosol | 35.13 | 64.32 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 67.18 | 60.65 |
| PGSC0003DMT400070587 | Potato | plastid | 44.62 | 50.58 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 41.79 | 50.31 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 48.72 | 45.35 |
| KRH76331 | Soybean | endoplasmic reticulum | 48.46 | 44.37 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 39.23 | 41.35 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 40.0 | 40.94 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 47.69 | 39.66 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 34.36 | 38.18 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 35.38 | 37.6 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 33.33 | 36.21 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 34.1 | 36.14 |
| AT4G09100.1 | Thale cress | extracellular | 11.54 | 34.09 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 20.51 | 33.61 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 33.33 | 32.99 |
| TraesCS1A01G444900.1 | Wheat | golgi, plasma membrane | 33.08 | 32.82 |
| Os05t0596500-01 | Rice | endoplasmic reticulum, plasma membrane | 31.28 | 31.69 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 31.28 | 31.2 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 33.59 | 30.32 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 33.59 | 30.18 |
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 29.74 | 28.5 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 29.23 | 28.01 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 32.56 | 26.85 |
| AT5G46650.1 | Thale cress | plasma membrane | 16.67 | 22.49 |
| AT4G40070.1 | Thale cress | extracellular, golgi, mitochondrion, plastid | 17.44 | 21.05 |
| AT4G17920.1 | Thale cress | plasma membrane | 15.13 | 20.42 |
| AT1G35330.1 | Thale cress | endoplasmic reticulum | 15.9 | 18.9 |
| AT4G09110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 14.62 | 18.87 |
| AT4G09120.1 | Thale cress | plasma membrane | 16.67 | 18.84 |
| AT2G34990.2 | Thale cress | plasma membrane | 15.64 | 18.83 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 17.69 | 18.75 |
| AT3G05200.1 | Thale cress | plasma membrane | 18.97 | 18.59 |
| AT2G27940.1 | Thale cress | plasma membrane | 11.03 | 18.14 |
| AT2G35420.1 | Thale cress | plasma membrane, plastid | 11.79 | 18.11 |
| AT1G72200.1 | Thale cress | plasma membrane | 18.21 | 17.57 |
| AT4G09130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 15.38 | 16.81 |
| AT1G22500.1 | Thale cress | plasma membrane | 16.41 | 16.8 |
| AT2G35000.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 15.9 | 16.4 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:816522 | ProteinID:AAD24393.1 | ProteinID:AEC06957.1 | ArrayExpress:AT2G20030 |
| EnsemblPlantsGene:AT2G20030 | RefSeq:AT2G20030 | TAIR:AT2G20030 | RefSeq:AT2G20030-TAIR-G | EnsemblPlants:AT2G20030.1 | TAIR:AT2G20030.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR013083 | RefSeq:NP_179593.1 | PFAM:PF13639 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009029 |
| PO:PO:0009046 | PO:PO:0009047 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF431 | UniProt:Q9SL78 |
| SMART:SM00184 | SUPFAM:SSF57850 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI00000A6944 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
Coordinates
chr2:+:8647721..8649225
Molecular Weight (calculated)
45016.5 Da
IEP (calculated)
9.234
GRAVY (calculated)
-0.471
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.