Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 58.96 | 55.77 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 56.62 | 55.33 |
| TraesCS1A01G444900.1 | Wheat | golgi, plasma membrane | 56.36 | 55.22 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 55.32 | 54.48 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 63.64 | 51.8 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 57.92 | 51.62 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 58.18 | 51.61 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 38.18 | 41.88 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 36.88 | 38.69 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 35.84 | 38.44 |
| CDY05713 | Canola | extracellular | 14.55 | 38.1 |
| PGSC0003DMT400070587 | Potato | plastid | 33.77 | 37.79 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 31.69 | 37.65 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 35.84 | 37.5 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 22.86 | 36.97 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 31.17 | 32.43 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 31.95 | 32.28 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 30.91 | 32.08 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 34.29 | 31.5 |
| CDY13888 | Canola | plasma membrane | 30.13 | 31.35 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 31.69 | 31.28 |
| KRH76331 | Soybean | endoplasmic reticulum | 34.29 | 30.99 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 29.61 | 29.77 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 30.65 | 28.92 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 31.43 | 28.81 |
| Bra024178.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 31.43 | 28.81 |
| Bra011068.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 31.17 | 28.78 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 31.17 | 28.78 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 30.39 | 28.61 |
| KRH62061 | Soybean | plastid | 20.0 | 28.41 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 30.65 | 28.3 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 30.39 | 28.19 |
| Os06t0695900-01 | Rice | endoplasmic reticulum, vacuole | 29.09 | 28.07 |
| Bra010349.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 30.39 | 27.86 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 31.17 | 27.78 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 33.77 | 27.72 |
| KRH16295 | Soybean | plasma membrane | 27.01 | 26.33 |
| KRH52730 | Soybean | golgi, plasma membrane, vacuole | 27.01 | 25.37 |
| CDY05714 | Canola | cytosol | 12.47 | 22.54 |
| Os10t0574400-01 | Rice | mitochondrion, plasma membrane, plastid | 10.91 | 21.11 |
| Os09t0468300-00 | Rice | golgi, plasma membrane | 19.22 | 19.12 |
| Os02t0572200-01 | Rice | plasma membrane | 17.14 | 18.91 |
| Os04t0450300-00 | Rice | endoplasmic reticulum, golgi | 16.62 | 18.88 |
| Os08t0484200-01 | Rice | golgi | 19.22 | 17.92 |
| Os03t0188200-01 | Rice | golgi | 16.36 | 17.85 |
| Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 18.18 | 16.09 |
| Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 17.92 | 15.61 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 16.36 | 14.42 |
| Os02t0572300-00 | Rice | nucleus, plastid | 15.06 | 13.88 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:4339820 | ProteinID:AAV59391.1 | ProteinID:AAW57798.1 | EMBL:AK070817 |
| ProteinID:BAF18434.1 | ProteinID:BAS95681.1 | ProteinID:EEE64922.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0061630 |
| InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlantsGene:Os05g0596500 | EnsemblPlants:Os05t0596500-01 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR14155 | PANTHER:PTHR14155:SF220 | UniProt:Q5TKE9 | SMART:SM00184 | SUPFAM:SSF57850 | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI00003A92C9 | RefSeq:XP_015637979.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
RING finger protein OsRFPH2-1, RING-H2 protein 1Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein). (Os05t0596500-01)
Coordinates
chr5:+:29718210..29719693
Molecular Weight (calculated)
41700.8 Da
IEP (calculated)
6.353
GRAVY (calculated)
-0.025
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAVSMSTTT RLPLVAALLS AAACVAAAQP ATAEAAPETP GVGIKVSFRP SVAIVVGIFT MIFSLTFLLL MYAKFCHPSS PVAAPAPTVV PAAAADDGVA
101: KPVIESLPFF RFAALRGARQ GLECAVCLAR FDDADLLRLL PRCRHAFHLD CVDRWLESKA SCPLCRARVD AEDAALGLKY ASSARFVPAG GASESERFDG
201: DQDLLGIFVE RVPSSRMEPA AAAHCPDLDR YKHRIVVSDA VFKSRWSEIN SSDLIALDTE LLRSMETMEV EMEMELYKET EEEETDHDHQ RKTLLAASGG
301: RSSVDAAARA RMISSSSSSG SVRSMSEMVS LPRLRAAMRE RLAHEDRWVP IARRTARWFA GRESRHDEAA PVVDSPPASH SNSLV
101: KPVIESLPFF RFAALRGARQ GLECAVCLAR FDDADLLRLL PRCRHAFHLD CVDRWLESKA SCPLCRARVD AEDAALGLKY ASSARFVPAG GASESERFDG
201: DQDLLGIFVE RVPSSRMEPA AAAHCPDLDR YKHRIVVSDA VFKSRWSEIN SSDLIALDTE LLRSMETMEV EMEMELYKET EEEETDHDHQ RKTLLAASGG
301: RSSVDAAARA RMISSSSSSG SVRSMSEMVS LPRLRAAMRE RLAHEDRWVP IARRTARWFA GRESRHDEAA PVVDSPPASH SNSLV
001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
Arabidopsis Description
ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.