Factsheet for Os02t0572200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 6
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

plasma membrane: 18260611

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05293	Sorghum	endoplasmic reticulum, golgi, plastid	57.31	52.91
Os04t0450300-00	Rice	endoplasmic reticulum, golgi	49.86	51.33
GSMUA_Achr8P09280_001	Banana	cytosol	6.3	45.83
Os09t0468300-00	Rice	golgi, plasma membrane	38.97	35.14
Os08t0484200-01	Rice	golgi	37.82	31.96
Os10t0574400-01	Rice	mitochondrion, plasma membrane, plastid	16.91	29.65
Os02t0572300-00	Rice	nucleus, plastid	33.24	27.75
Os03t0188200-01	Rice	golgi	27.79	27.48
Os06t0218300-01	Rice	endoplasmic reticulum, extracellular, golgi	33.52	26.47
KRH38505	Soybean	plasma membrane, vacuole	21.2	25.96
Os02t0759400-01	Rice	endoplasmic reticulum, golgi, mitochondrion, plastid	30.95	24.71
KRH13267	Soybean	plasma membrane	10.32	22.09
Os03t0391100-00	Rice	endoplasmic reticulum, golgi	26.65	21.38
Os06t0695900-01	Rice	endoplasmic reticulum, vacuole	19.77	17.29
Os05t0596500-01	Rice	endoplasmic reticulum, plasma membrane	18.91	17.14

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	EntrezGene:4329732	EMBL:AK109591	ProteinID:BAD17281.1	ProteinID:BAF09108.1
ProteinID:BAS79352.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083
EnsemblPlantsGene:Os02g0572200	EnsemblPlants:Os02t0572200-01	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF414
UniProt:Q6Z5I5	SMART:SM00184	SUPFAM:SSF57850	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000035AE7B
RefSeq:XP_015624713.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein). (Os02t0572200-01)

Coordinates

chr2:+:21917368..21918679

Molecular Weight (calculated)

36820.7 Da

IEP (calculated)

8.100

GRAVY (calculated)

-0.159

Length

349 amino acids

Sequence
(BLAST)

001: MGRRARCLCL LLLLLLVVGG GFHVANAQAS PAPPQTGTRA VNRAVSTVIT VVIGVFFVLV FVCVIVNQCC DCDSSAGAGA GQGQSSAARR RRGLDPAAVA
101: AIPVVPYAEV RKHRSGGGGA LECAVCLTVF DDGDDLRLLP QCSHAFHPDC IDPWLEGHVT CPLCRANLEK QPAPSPPAVE FSSSPAAAAA AAEESRTPEA
201: AAVRVEEVAE ASDEEETRRR EEEAVELESL RAVRRAARMP RSNSTGHSLC ALPAPRAPGP GDGGDHERFT VRLPPHVREE VLKSRRLRHA TSLVLGIRGS
301: SREGSSRGGG GSWHGARRWP SFLARTVSWA RGGVGADTSA KETPCRDAV

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.