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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • plastid 4
  • endoplasmic reticulum 4
  • nucleus 1
  • extracellular 3
  • vacuole 3
  • plasma membrane 4
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY50930 Canola endoplasmic reticulum, plasma membrane 100.0 100.0
CDX92900 Canola endoplasmic reticulum, plasma membrane 90.48 91.57
Bra011068.1-P Field mustard endoplasmic reticulum, plasma membrane 81.67 82.25
Bra010349.1-P Field mustard endoplasmic reticulum, plasma membrane 80.24 80.24
AT4G28890.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 82.38 80.09
PGSC0003DMT400070587 Potato plastid 44.05 53.78
Solyc05g018310.1.1 Tomato extracellular, plasma membrane, vacuole 40.48 52.47
KRH39345 Soybean endoplasmic reticulum, vacuole 46.9 47.02
KRH76331 Soybean endoplasmic reticulum 46.67 46.01
PGSC0003DMT400000810 Potato plasma membrane 40.0 45.41
Solyc12g007320.1.1 Tomato plasma membrane 39.52 43.57
VIT_11s0016g03420.t01 Wine grape plastid 47.38 42.43
GSMUA_Achr6P26720_001 Banana plasma membrane 33.81 40.46
GSMUA_Achr9P06250_001 Banana endoplasmic reticulum, plasma membrane 35.0 40.05
GSMUA_Achr9P00230_001 Banana vacuole 34.05 38.86
GSMUA_Achr4P08120_001 Banana plasma membrane 32.14 37.6
HORVU1Hr1G095220.1 Barley golgi, plasma membrane 31.9 34.01
Zm00001d039216_P001 Maize endoplasmic reticulum, extracellular, golgi 30.95 33.25
GSMUA_Achr6P22700_001 Banana plasma membrane 18.81 33.19
TraesCS1A01G444900.1 Wheat golgi, plasma membrane 30.24 32.32
Os05t0596500-01 Rice endoplasmic reticulum, plasma membrane 28.81 31.43
Zm00001d009777_P001 Maize extracellular, golgi, plasma membrane 29.29 30.22
TraesCS1B01G479700.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 30.95 30.09
TraesCS1D01G453000.1 Wheat extracellular, plasma membrane 30.95 29.95
Bra009136.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 27.62 28.71
EES18815 Sorghum endoplasmic reticulum, extracellular, plasma membrane 32.14 28.54
Bra038386.1-P Field mustard extracellular 9.05 27.54
Bra011991.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 9.29 27.46
Bra010641.1-P Field mustard extracellular, golgi 16.43 22.4
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 15.71 21.71
Bra025008.1-P Field mustard plastid 14.52 21.25
Bra005375.1-P Field mustard cytosol, nucleus, plastid 15.71 21.09
Bra040855.1-P Field mustard golgi, plasma membrane 18.81 21.01
Bra036631.1-P Field mustard plasma membrane 17.38 20.86
Bra009962.1-P Field mustard mitochondrion, plastid 14.05 20.63
Bra012330.1-P Field mustard golgi, plasma membrane 16.67 20.35
Bra040642.1-P Field mustard plasma membrane 18.57 20.21
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 17.14 20.06
Bra017535.1-P Field mustard nucleus, plasma membrane, plastid 13.33 19.93
Bra013268.1-P Field mustard plasma membrane 13.33 19.05
Bra008016.1-P Field mustard plasma membrane 18.1 18.86
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 16.9 18.39
Bra020591.1-P Field mustard plasma membrane 15.95 17.59
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 13.81 17.11
Bra028075.1-P Field mustard plasma membrane 14.29 17.0
Bra008015.1-P Field mustard plasma membrane 15.71 16.67
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 14.52 16.58
Bra005343.1-P Field mustard plastid 10.95 16.49
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 11.43 13.79
Bra017320.1-P Field mustard extracellular, nucleus, plasma membrane 10.24 12.8
Bra012630.1-P Field mustard nucleus 12.62 8.56
Protein Annotations
EnsemblPlants:Bra024178.1EnsemblPlants:Bra024178.1-PEnsemblPlantsGene:Bra024178Gene3D:3.30.40.10GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155
PANTHER:PTHR14155:SF431PFAM:PF13639PFscan:PS50089SEG:segSignalP:SignalP-TMSMART:SM00184
SUPFAM:SSF57850TMHMM:TMhelixUniParc:UPI0002540C44UniProt:M4E5X4MapMan:19.2.2.1.5.3.3:
Description
AT4G28890 (E=2e-171) | protein binding / ubiquitin-protein ligase/ zinc ion binding
Coordinates
chrA03:-:27103809..27105071
Molecular Weight (calculated)
48052.5 Da
IEP (calculated)
8.030
GRAVY (calculated)
-0.360
Length
420 amino acids
Sequence
(BLAST)
001: MYLIFFFILT TIHSYYYVSA QPPPPPLTNG DLVANFEPSL AVVTVVLAIM FSLTFFLLVY AKCCHIDLRS RTGEGRRQDR RIIQGIFVNR SANSSDRFSG
101: LDKTVIESLP LFRFSALKGS KQGLDCSVCL SKFESVEILR LLPKCRHAFH IGCIDQWLEE HATCPLCRDR VSIEEEYSVY GNSFRFLNQS EVREDSSLEL
201: YIEREQEEEE VGGSSRFSIG DSFRKILKLG HKEKPLLDQH GNDKDERKLM HKFNHRIIVS DVVFKNRWSN VSSSDLMFLN SEMVSSISSE RFLSMDRVKR
301: GDEEDGRGSL QVKEDTEAKR MLENKLTSMK TMLLSENGES GSKSRSVMVE TGRRSVSEIT AVPRLGIAVH GDYSGSTAAT ALETERRRRL WLPIARNTAQ
401: WFANRELRRQ INTTHLHLDV
Best Arabidopsis Sequence Match ( AT4G28890.1 )
(BLAST)
001: MYQIFFFFLP LLHSYASAQT PPPFRNGDLV ANFEPSLAVV TGVLAIMFAL TFVLLVYAKC CHIDLRSGSG DRRRHDRRLR QGIFFNRSTA SSDRFSGLDK
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV
Arabidopsis Description
ATL42E3 ubiquitin-protein ligase ATL42 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF85]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.