Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • plasma membrane 3
  • nucleus 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:plasma membrane
Plant-mPloc:nucleus
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G72200.1 Bra002403.1-P AT5G22290.1 21798944
AT1G72200.1 Bra006619.1-P AT5G22290.1 21798944
AT1G72200.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY03651 Canola plasma membrane 100.0 100.0
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 75.93 85.24
AT1G72200.1 Thale cress plasma membrane 78.41 78.22
Bra008015.1-P Field mustard plasma membrane 73.45 74.75
Bra040855.1-P Field mustard golgi, plasma membrane 60.79 65.16
Bra012330.1-P Field mustard golgi, plasma membrane 52.85 61.92
KRH52998 Soybean endoplasmic reticulum, extracellular, plasma membrane 32.26 38.92
KRH62285 Soybean endoplasmic reticulum, plasma membrane, vacuole 32.26 38.24
KRH72413 Soybean cytosol, golgi, vacuole 35.24 37.97
VIT_18s0001g06670.t01 Wine grape extracellular, plasma membrane, vacuole 36.48 36.93
KRH16796 Soybean cytosol, endoplasmic reticulum, plasma membrane, plastid 34.49 36.68
Bra038386.1-P Field mustard extracellular 11.91 34.78
Bra036631.1-P Field mustard plasma membrane 29.53 34.0
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 25.56 33.88
Bra009962.1-P Field mustard mitochondrion, plastid 23.33 32.87
PGSC0003DMT400005472 Potato endoplasmic reticulum, plasma membrane, vacuole 31.76 32.74
GSMUA_Achr6P30500_001 Banana plasma membrane 23.33 32.19
Bra040642.1-P Field mustard plasma membrane 30.77 32.12
HORVU4Hr1G022090.1 Barley endoplasmic reticulum, golgi, plasma membrane 16.87 32.08
Solyc04g074820.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 31.27 32.06
GSMUA_Achr5P17910_001 Banana golgi, plasma membrane, vacuole 27.3 31.88
Bra010641.1-P Field mustard extracellular, golgi 24.32 31.82
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 29.03 31.79
Solyc12g087860.1.1 Tomato vacuole 29.28 31.64
PGSC0003DMT400045807 Potato plasma membrane 29.53 31.48
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 26.3 31.27
Bra011991.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 10.92 30.99
KRH72412 Soybean nucleus, plasma membrane, plastid 29.53 30.83
TraesCS5D01G254900.1 Wheat golgi, plasma membrane 29.78 30.61
GSMUA_AchrUn_... Banana golgi, plasma membrane 26.8 30.59
GSMUA_Achr3P20400_001 Banana mitochondrion 26.05 30.52
GSMUA_Achr7P12810_001 Banana endoplasmic reticulum, plasma membrane, vacuole 23.08 30.49
Zm00001d005936_P001 Maize plasma membrane 29.53 30.28
HORVU5Hr1G069980.1 Barley plasma membrane 28.78 30.21
GSMUA_Achr3P06680_001 Banana mitochondrion, plastid 29.03 30.15
KRH16794 Soybean plasma membrane 29.28 30.1
TraesCS5A01G248100.1 Wheat plasma membrane 29.28 29.72
TraesCS5B01G245800.1 Wheat plasma membrane 29.03 29.55
Os09t0468300-00 Rice golgi, plasma membrane 28.29 29.46
Bra020591.1-P Field mustard plasma membrane 27.79 29.4
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 28.04 29.27
Bra005375.1-P Field mustard cytosol, nucleus, plastid 22.58 29.07
GSMUA_AchrUn_... Banana plastid 25.81 28.89
GSMUA_Achr9P15010_001 Banana endoplasmic reticulum, plasma membrane 25.56 28.77
EER99041 Sorghum endoplasmic reticulum, plasma membrane 29.03 28.4
Zm00001d020789_P001 Maize plasma membrane 28.04 28.39
GSMUA_Achr10P... Banana plasma membrane 27.3 28.35
TraesCS3D01G495500.1 Wheat vacuole 26.55 27.72
Zm00001d031261_P001 Maize golgi 25.81 27.59
Bra028075.1-P Field mustard plasma membrane 24.07 27.48
TraesCS3B01G549900.1 Wheat vacuole 21.34 27.3
TraesCS6D01G113000.1 Wheat golgi 26.8 26.93
HORVU4Hr1G078260.1 Barley plasma membrane 23.82 26.89
TraesCS6A01G122800.1 Wheat endoplasmic reticulum, golgi, mitochondrion 27.05 26.85
TraesCS6B01G151000.1 Wheat extracellular, golgi, plasma membrane 26.8 26.73
EER92732 Sorghum golgi 24.32 26.63
Zm00001d052189_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 27.3 26.51
EES18560 Sorghum golgi, plasma membrane 25.81 26.46
Os08t0484200-01 Rice golgi 27.05 26.39
HORVU6Hr1G022590.1 Barley golgi, mitochondrion 26.3 26.24
HORVU4Hr1G080840.1 Barley cytosol 15.38 26.16
Zm00001d018122_P001 Maize vacuole 27.05 26.01
OQU85775 Sorghum golgi, plasma membrane, vacuole 27.3 26.0
TraesCS4A01G404600.1 Wheat plasma membrane 22.83 25.92
TraesCS4B01G304400.1 Wheat plasma membrane 22.83 25.92
Zm00001d037192_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 27.05 25.89
Zm00001d027983_P001 Maize plasma membrane, plastid 23.08 25.69
TraesCS4D01G302600.1 Wheat plasma membrane 22.58 25.63
Os03t0188200-01 Rice golgi 22.33 25.5
TraesCS6D01G294800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 25.31 25.19
Bra025008.1-P Field mustard plastid 17.87 25.09
Bra017535.1-P Field mustard nucleus, plasma membrane, plastid 17.37 24.91
TraesCS6B01G346000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 24.81 24.88
Bra013268.1-P Field mustard plasma membrane 18.11 24.83
TraesCS6A01G315600.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 24.81 24.69
TraesCS7D01G178000.1 Wheat golgi 24.81 24.51
Zm00001d048230_P001 Maize golgi 23.08 24.47
TraesCS7B01G081700.1 Wheat golgi 25.06 24.4
HORVU6Hr1G077610.1 Barley plasma membrane 24.57 24.38
TraesCS7A01G176700.1 Wheat golgi 25.06 24.34
Os02t0759400-01 Rice endoplasmic reticulum, golgi, mitochondrion, plastid 26.05 24.03
Os06t0218300-01 Rice endoplasmic reticulum, extracellular, golgi 26.3 23.98
TraesCS4A01G104900.1 Wheat mitochondrion 22.58 23.51
Zm00001d029395_P001 Maize plasma membrane, plastid 22.33 23.5
KXG39223 Sorghum golgi, plasma membrane, plastid, vacuole 22.08 23.0
Os03t0391100-00 Rice endoplasmic reticulum, golgi 24.81 22.99
HORVU4Hr1G057610.1 Barley plastid 23.33 22.82
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 19.35 22.41
TraesCS4D01G200100.1 Wheat plastid 22.58 21.98
OQU76061 Sorghum cytosol, peroxisome, plasma membrane 28.54 21.1
TraesCS4B01G199100.1 Wheat plastid 22.83 20.58
HORVU7Hr1G036380.2 Barley endoplasmic reticulum 21.09 20.43
Bra005343.1-P Field mustard plastid 13.15 19.0
Bra010349.1-P Field mustard endoplasmic reticulum, plasma membrane 19.6 18.81
Bra011068.1-P Field mustard endoplasmic reticulum, plasma membrane 18.86 18.23
Bra024178.1-P Field mustard endoplasmic reticulum, plasma membrane 18.86 18.1
Bra009136.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 17.62 17.57
Bra017320.1-P Field mustard extracellular, nucleus, plasma membrane 13.65 16.37
Bra012630.1-P Field mustard nucleus 17.37 11.31
Protein Annotations
EnsemblPlants:Bra008016.1EnsemblPlants:Bra008016.1-PEnsemblPlantsGene:Bra008016Gene3D:3.30.40.10GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155
PANTHER:PTHR14155:SF414PFAM:PF13639PFscan:PS50089SEG:segSignalP:SignalP-TMSMART:SM00184
SUPFAM:SSF57850TMHMM:TMhelixUniParc:UPI0002546FEAUniProt:M4CUX1MapMan:19.2.2.1.5.3.3:
Description
AT1G72200 (E=7e-169) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA02:-:12560616..12561827
Molecular Weight (calculated)
44298.9 Da
IEP (calculated)
8.731
GRAVY (calculated)
-0.265
Length
403 amino acids
Sequence
(BLAST)
001: MNPKGRISLK RSITGHHGSI LQLHLFLLLF SGQASAQATH GGSDMYRESS RFDPTMAILM IVLVSVFFAL GFFSVYIRRC LERVMGMDNT HPADAGGNWL
101: SLSRPQARGL DASVIETFPT FRYSTVKTLR IGKEALECPV CLNEFEDAER LRLIPKCCHV FHPGCIDAWL QSHPTCPLCR ANLVPVPGEP IVSIQIPGLA
201: DEAPGSELTG DRITVLGSPD ARLIDSVALT GNQSMPRRSL STGWNLAGVF TNSDWTGQHG ENLDRFTLRL PQDIYNKLVN PSFSKGHVAL PQVMSSARGY
301: RTGSLETDTN YFYYERFDQG GRLDRRPFSM TPPYRTGSIN TSPGGSGDQV RAGTPKGLLL AMKSPFDRLF LGKNNIGERS SNNNIGERSS DHLRAGNASH
401: LTV
Best Arabidopsis Sequence Match ( AT1G72200.1 )
(BLAST)
001: MNPKGRTNLN RSIIGGHDHG SILQLLLFLL LLSSHGGFKF VAGQATHGGS DVSGDSSRFD PTMAILMIVL VSVFFFLGFF SVYIRRCLER VMGMDYGNPN
101: DAGNWLATNR QQARGLDASI IETFPTFQYS TVKTLRIGKE ALECSVCLNE FEDDETLRLI PKCCHVFHPG CIDAWLRSHT TCPLCRADLI PVPGESIVSI
201: QIPGLVNDPP GSDPNGDRIR SLGSPDARLI ESVALTCNQS MPRRSMSTGW NLAGMFTNSD RTGQHSENLD RFTLRLPQDI HNKLVNPNLS KVHVALPQVM
301: SSTRGYRTGS LGSERNYFYY ERFDQDGRLD RRPFSITPPY RTSSINHMSP GGSGGDKVRA SSPKSLLLAM RSPFDRLFLG KNNNVGENSS DHLRSCDATP
401: SNTV
Arabidopsis Description
ATL11RING-H2 finger protein ATL11 [Source:UniProtKB/Swiss-Prot;Acc:Q84W40]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.