Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72200.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT1G72200.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g087860.1.1 | Tomato | vacuole | 88.62 | 89.81 |
| PGSC0003DMT400005472 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 40.74 | 39.39 |
| KRH52998 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 32.01 | 36.23 |
| KRH62285 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 30.42 | 33.82 |
| KRH16796 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 33.07 | 32.98 |
| KRH72413 | Soybean | cytosol, golgi, vacuole | 31.75 | 32.09 |
| Bra003887.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 29.37 | 30.92 |
| AT1G22500.1 | Thale cress | plasma membrane | 30.95 | 30.71 |
| CDY62007 | Canola | golgi, plasma membrane | 30.16 | 30.32 |
| Bra040855.1-P | Field mustard | golgi, plasma membrane | 30.16 | 30.32 |
| CDY21367 | Canola | golgi, plasma membrane | 30.16 | 30.32 |
| CDX82179 | Canola | plasma membrane | 27.78 | 29.91 |
| CDY70284 | Canola | plasma membrane | 30.69 | 29.82 |
| CDY03651 | Canola | plasma membrane | 31.48 | 29.53 |
| Bra008016.1-P | Field mustard | plasma membrane | 31.48 | 29.53 |
| Bra012330.1-P | Field mustard | golgi, plasma membrane | 25.93 | 28.49 |
| VIT_18s0001g06670.t01 | Wine grape | extracellular, plasma membrane, vacuole | 29.89 | 28.39 |
| PGSC0003DMT400001221 | Potato | vacuole | 14.02 | 28.34 |
| HORVU4Hr1G022090.1 | Barley | endoplasmic reticulum, golgi, plasma membrane | 15.87 | 28.3 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 25.66 | 28.2 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 25.66 | 28.12 |
| CDX82176 | Canola | extracellular | 26.98 | 27.95 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 22.49 | 27.87 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 21.43 | 27.74 |
| AT1G72200.1 | Thale cress | plasma membrane | 29.37 | 27.48 |
| CDX82175 | Canola | extracellular | 16.93 | 27.35 |
| PGSC0003DMT400073575 | Potato | extracellular, plasma membrane | 31.22 | 27.25 |
| PGSC0003DMT400046825 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 28.04 | 26.63 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 24.87 | 26.63 |
| TraesCS5D01G254900.1 | Wheat | golgi, plasma membrane | 27.51 | 26.53 |
| TraesCS3D01G495500.1 | Wheat | vacuole | 26.98 | 26.42 |
| HORVU5Hr1G069980.1 | Barley | plasma membrane | 26.72 | 26.3 |
| Bra008015.1-P | Field mustard | plasma membrane | 27.51 | 26.26 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 27.51 | 26.26 |
| CDY03652 | Canola | plasma membrane | 27.51 | 26.26 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 24.87 | 26.26 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 26.72 | 26.03 |
| Zm00001d005936_P001 | Maize | plasma membrane | 26.98 | 25.95 |
| TraesCS5A01G248100.1 | Wheat | plasma membrane | 27.25 | 25.94 |
| Os09t0468300-00 | Rice | golgi, plasma membrane | 25.93 | 25.32 |
| HORVU4Hr1G080840.1 | Barley | cytosol | 15.87 | 25.32 |
| GSMUA_AchrUn_... | Banana | plastid | 24.07 | 25.28 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 20.63 | 24.76 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 26.45 | 24.75 |
| TraesCS6D01G113000.1 | Wheat | golgi | 26.19 | 24.69 |
| TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 26.19 | 24.38 |
| KRH72412 | Soybean | nucleus, plasma membrane, plastid | 24.87 | 24.35 |
| Zm00001d020789_P001 | Maize | plasma membrane | 25.4 | 24.12 |
| HORVU4Hr1G078260.1 | Barley | plasma membrane | 22.49 | 23.81 |
| EER99041 | Sorghum | endoplasmic reticulum, plasma membrane | 25.93 | 23.79 |
| HORVU6Hr1G022590.1 | Barley | golgi, mitochondrion | 25.4 | 23.76 |
| Os08t0484200-01 | Rice | golgi | 25.93 | 23.73 |
| GSMUA_Achr10P... | Banana | plasma membrane | 24.34 | 23.71 |
| KRH16794 | Soybean | plasma membrane | 24.34 | 23.47 |
| EES18560 | Sorghum | golgi, plasma membrane | 24.34 | 23.41 |
| TraesCS4A01G404600.1 | Wheat | plasma membrane | 21.96 | 23.38 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 24.6 | 23.13 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 25.4 | 23.13 |
| Zm00001d031261_P001 | Maize | golgi | 23.02 | 23.08 |
| Zm00001d018122_P001 | Maize | vacuole | 25.4 | 22.91 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 21.43 | 22.82 |
| TraesCS4D01G302600.1 | Wheat | plasma membrane | 21.43 | 22.82 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 25.4 | 22.8 |
| TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 24.34 | 22.72 |
| Os03t0188200-01 | Rice | golgi | 21.16 | 22.66 |
| HORVU6Hr1G077610.1 | Barley | plasma membrane | 24.34 | 22.66 |
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 24.07 | 22.47 |
| OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 25.13 | 22.46 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 14.02 | 22.27 |
| TraesCS7D01G178000.1 | Wheat | golgi | 23.55 | 21.81 |
| TraesCS7B01G081700.1 | Wheat | golgi | 23.81 | 21.74 |
| EER92732 | Sorghum | golgi | 20.9 | 21.47 |
| TraesCS7A01G176700.1 | Wheat | golgi | 23.55 | 21.45 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 13.49 | 21.43 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 20.11 | 20.99 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 23.81 | 20.59 |
| Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 23.81 | 20.36 |
| Zm00001d048230_P001 | Maize | golgi | 20.37 | 20.26 |
| TraesCS4A01G104900.1 | Wheat | mitochondrion | 20.37 | 19.9 |
| KXG39223 | Sorghum | golgi, plasma membrane, plastid, vacuole | 19.84 | 19.38 |
| TraesCS4D01G200100.1 | Wheat | plastid | 21.16 | 19.32 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 19.31 | 19.06 |
| HORVU4Hr1G057610.1 | Barley | plastid | 20.63 | 18.93 |
| Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 20.9 | 18.16 |
| OQU76061 | Sorghum | cytosol, peroxisome, plasma membrane | 25.4 | 17.61 |
| TraesCS4B01G199100.1 | Wheat | plastid | 20.63 | 17.45 |
| HORVU7Hr1G036380.2 | Barley | endoplasmic reticulum | 19.05 | 17.31 |
| PGSC0003DMT400070587 | Potato | plastid | 15.61 | 17.15 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 15.34 | 15.68 |
| PGSC0003DMT400078951 | Potato | plasma membrane | 16.67 | 14.93 |
Protein Annotations
| EntrezGene:102604905 | MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M1BI87 | PFAM:PF13639 | EnsemblPlantsGene:PGSC0003DMG400017762 | PGSC:PGSC0003DMG400017762 |
| EnsemblPlants:PGSC0003DMT400045807 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF263 | SMART:SM00184 | SUPFAM:SSF57850 |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0002960165 | RefSeq:XP_006360253.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
RING/C3HC4/PHD zinc finger [Source:PGSC_GENE;Acc:PGSC0003DMG400017762]
Coordinates
chr12:+:55592919..55594250
Molecular Weight (calculated)
42704.5 Da
IEP (calculated)
8.918
GRAVY (calculated)
-0.379
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHKTNIFYF VLCFFCVVAK AGTTLDTPSL PPTTLMHPID PSNVQISPTL AVILACLVLI LFAGVFIYMR RMSPDSFDHS LGFHFLRNRP PVNRGLDPEI
101: IKTFPVFVYS DVKSLNLGKS ILECAVCLNE FEDEETLRLL PNCHHVFHPE CIDAWLAFRT TCPVCRTNLK TKPIKPTDPQ HENSVTDTII DIHMTSVVGP
201: QEVNNASPQK SIDSHNIPNC SNAKRKTPDF LSITRKSPTP TRTNILRMFN RSHSTGHSLI QPGQNCERFT LKLPEDARKR LMELSLSRAY NNGEVLSLER
301: STSSKGYRFE PGNGRFKFLS TPNLLSNKPG SPKEEKSEKE PKNLLRSVKS PLRLLCVTEK EEETGERSFT YLRSNPSS
101: IKTFPVFVYS DVKSLNLGKS ILECAVCLNE FEDEETLRLL PNCHHVFHPE CIDAWLAFRT TCPVCRTNLK TKPIKPTDPQ HENSVTDTII DIHMTSVVGP
201: QEVNNASPQK SIDSHNIPNC SNAKRKTPDF LSITRKSPTP TRTNILRMFN RSHSTGHSLI QPGQNCERFT LKLPEDARKR LMELSLSRAY NNGEVLSLER
301: STSSKGYRFE PGNGRFKFLS TPNLLSNKPG SPKEEKSEKE PKNLLRSVKS PLRLLCVTEK EEETGERSFT YLRSNPSS
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Arabidopsis Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.