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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, plastid, vacuole

Predictor Summary:
  • nucleus 1
  • plastid 2
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane, plastid, vacuole
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d029395_P001 Maize plasma membrane, plastid 64.86 65.54
TraesCS4A01G104900.1 Wheat mitochondrion 62.79 62.79
TraesCS4D01G200100.1 Wheat plastid 65.89 61.59
HORVU4Hr1G057610.1 Barley plastid 65.37 61.41
TraesCS4B01G199100.1 Wheat plastid 65.63 56.82
Os03t0391100-00 Rice endoplasmic reticulum, golgi 51.42 45.75
AT4G09100.1 Thale cress extracellular 12.92 37.88
CDX75097 Canola extracellular 11.89 33.33
Bra038386.1-P Field mustard extracellular 11.63 32.61
CDY48058 Canola extracellular 11.63 32.61
KRG92822 Soybean endoplasmic reticulum, plasma membrane, vacuole 25.06 28.87
GSMUA_AchrUn_... Banana plastid 25.84 27.78
CDY53236 Canola plasma membrane 24.55 27.38
Bra010641.1-P Field mustard extracellular, golgi 21.45 26.95
CDX90377 Canola extracellular, golgi 21.45 26.95
KRH33975 Soybean golgi, plasma membrane, vacuole 24.81 26.74
EES18560 Sorghum golgi, plasma membrane 27.13 26.72
CDY39477 Canola extracellular 21.19 26.45
CDY18787 Canola plasma membrane 26.36 26.36
CDY19719 Canola endoplasmic reticulum, plasma membrane, vacuole 23.77 26.29
CDX82175 Canola extracellular 15.76 26.07
Bra036631.1-P Field mustard plasma membrane 23.51 26.0
Bra040642.1-P Field mustard plasma membrane 25.84 25.91
CDX99986 Canola plasma membrane 23.0 25.5
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 23.51 25.35
Bra009962.1-P Field mustard mitochondrion, plastid 18.6 25.17
EER92732 Sorghum golgi 23.77 25.0
KRH72413 Soybean cytosol, golgi, vacuole 24.03 24.87
KRH68588 Soybean plasma membrane 23.51 24.86
EER99041 Sorghum endoplasmic reticulum, plasma membrane 26.36 24.76
CDX80653 Canola plasma membrane 19.38 24.75
AT5G27420.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 23.51 24.73
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 19.38 24.67
CDX86162 Canola endoplasmic reticulum, plasma membrane, vacuole 19.38 24.67
CDX86163 Canola plasma membrane 19.12 24.67
KRH16796 Soybean cytosol, endoplasmic reticulum, plasma membrane, plastid 24.03 24.54
KRG96857 Soybean vacuole 23.77 24.53
AT3G05200.1 Thale cress plasma membrane 25.06 24.37
CDY05577 Canola plasma membrane 23.77 24.08
CDY25038 Canola plasma membrane 23.0 24.05
OQU82489 Sorghum plasma membrane, vacuole 14.73 24.05
KRH52998 Soybean endoplasmic reticulum, extracellular, plasma membrane 20.67 23.95
PGSC0003DMT400046825 Potato endoplasmic reticulum, plasma membrane, vacuole 24.55 23.87
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 23.77 23.83
VIT_14s0128g00120.t01 Wine grape plasma membrane, plastid, vacuole 25.84 23.81
CDY05049 Canola plasma membrane 17.83 23.63
Solyc03g112340.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 24.29 23.62
KRH62285 Soybean endoplasmic reticulum, plasma membrane, vacuole 20.67 23.53
Bra020591.1-P Field mustard plasma membrane 23.0 23.36
PGSC0003DMT400073575 Potato extracellular, plasma membrane 26.1 23.33
EES05293 Sorghum endoplasmic reticulum, golgi, plastid 22.48 23.02
AT4G09110.1 Thale cress endoplasmic reticulum, extracellular, golgi 17.83 22.85
CDX82179 Canola plasma membrane 20.67 22.79
CDY70284 Canola plasma membrane 22.74 22.62
VIT_18s0001g06670.t01 Wine grape extracellular, plasma membrane, vacuole 23.26 22.61
Bra005375.1-P Field mustard cytosol, nucleus, plastid 18.09 22.36
CDX84270 Canola cytosol, plastid, vacuole 18.09 22.36
CDY31656 Canola cytosol, endoplasmic reticulum, plastid 18.09 22.36
AT4G40070.1 Thale cress extracellular, golgi, mitochondrion, plastid 18.6 22.29
CDX82176 Canola extracellular 20.93 22.19
Bra008016.1-P Field mustard plasma membrane 23.0 22.08
CDY03651 Canola plasma membrane 23.0 22.08
AT1G72200.1 Thale cress plasma membrane 23.0 22.03
PGSC0003DMT400005472 Potato endoplasmic reticulum, plasma membrane, vacuole 22.22 21.99
AT2G34990.2 Thale cress plasma membrane 18.35 21.91
OQU85775 Sorghum golgi, plasma membrane, vacuole 23.77 21.75
AT2G35000.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 21.19 21.69
OQU92087 Sorghum golgi, peroxisome, plastid 13.95 21.69
KXG26428 Sorghum plasma membrane 22.74 21.67
Bra040855.1-P Field mustard golgi, plasma membrane 20.93 21.54
CDY21367 Canola golgi, plasma membrane 20.93 21.54
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 18.86 21.53
CDX84269 Canola endoplasmic reticulum, plasma membrane, plastid 20.41 21.47
CDY31657 Canola extracellular, plasma membrane, plastid 20.41 21.47
AT4G09120.1 Thale cress plasma membrane 19.12 21.45
Solyc04g074820.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 21.71 21.37
CDY62007 Canola golgi, plasma membrane 20.67 21.28
CDX90713 Canola extracellular, golgi, plasma membrane 18.6 21.24
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 20.16 21.2
AT1G22500.1 Thale cress plasma membrane 20.41 20.73
AT4G09130.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 19.12 20.73
Bra008015.1-P Field mustard plasma membrane 21.19 20.71
CDY03652 Canola plasma membrane 21.19 20.71
Bra012330.1-P Field mustard golgi, plasma membrane 18.09 20.35
AT1G35330.1 Thale cress endoplasmic reticulum 17.05 20.12
PGSC0003DMT400045807 Potato plasma membrane 19.38 19.84
CDY03116 Canola plasma membrane 18.09 19.83
CDY12022 Canola plasma membrane 18.09 19.83
Solyc12g087860.1.1 Tomato vacuole 18.86 19.57
Bra028075.1-P Field mustard plasma membrane 17.57 19.26
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 17.31 19.25
KRH72412 Soybean nucleus, plasma membrane, plastid 18.86 18.91
KRH16794 Soybean plasma membrane 18.86 18.62
OQU76061 Sorghum cytosol, peroxisome, plasma membrane 24.55 17.43
CDY70750 Canola extracellular, mitochondrion, nucleus 12.92 16.5
CDY27787 Canola extracellular, plasma membrane, vacuole 12.4 15.95
EER90301 Sorghum endoplasmic reticulum, golgi, vacuole 16.54 15.92
CDY05145 Canola plasma membrane 12.14 15.82
CDY12527 Canola extracellular, plasma membrane, vacuole 8.27 13.45
CDY25739 Canola endoplasmic reticulum, extracellular, plasma membrane 8.01 13.03
CDY50446 Canola mitochondrion 7.75 12.55
EES18815 Sorghum endoplasmic reticulum, extracellular, plasma membrane 14.47 11.84
Protein Annotations
EnsemblPlants:KXG39223EnsemblPlantsGene:SORBI_3001G350100Gene3D:3.30.40.10GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155PANTHER:PTHR14155:SF208
PFAM:PF13639PFscan:PS50089ProteinID:KXG39223ProteinID:KXG39223.1SEG:segSMART:SM00184
SUPFAM:SSF57850TMHMM:TMhelixUniParc:UPI00081ABF50UniProt:A0A1B6QMT4MapMan:19.2.2.1.5.3.3:
Description
hypothetical protein
Coordinates
chr1:-:63986461..63987624
Molecular Weight (calculated)
39232.2 Da
IEP (calculated)
6.253
GRAVY (calculated)
0.121
Length
387 amino acids
Sequence
(BLAST)
001: MDAGGGGGGG GGGGGRFTLT TSLLFVGLIV ALFVLGFFSS FLRRCSGADT NTARRGGAAL AANAAVAAAA AAAFASAGGR RRAAGAGLDA AAMEALPVLT
101: YATARAVKAG RGALECAVCL SAFDDAGEKL RLLPGCCHVF HAACIDAWLA AHVTCPVCRA DLSDPAVADA GHVLAADLAA QADAGAPTAD TVVIVNVVDG
201: STPPAAGAGA GAGHGTTSSD EEQQAEETAE ERVDRFTLRL PERLRREIDE AKRLRRALSA VTASSTALPT CGGPLASSAA LRTMSAARPL PSRRWSGLFR
301: ALSGSSRRMT SEPDGGYRRV VPLPTTGTGD GEVEVVVVRD EVDKYYAHSL TFAGFVIDGD VAAGDWNPEV FQVKTDVSAV AAATSQR
Best Arabidopsis Sequence Match ( AT1G72200.1 )
(BLAST)
001: MNPKGRTNLN RSIIGGHDHG SILQLLLFLL LLSSHGGFKF VAGQATHGGS DVSGDSSRFD PTMAILMIVL VSVFFFLGFF SVYIRRCLER VMGMDYGNPN
101: DAGNWLATNR QQARGLDASI IETFPTFQYS TVKTLRIGKE ALECSVCLNE FEDDETLRLI PKCCHVFHPG CIDAWLRSHT TCPLCRADLI PVPGESIVSI
201: QIPGLVNDPP GSDPNGDRIR SLGSPDARLI ESVALTCNQS MPRRSMSTGW NLAGMFTNSD RTGQHSENLD RFTLRLPQDI HNKLVNPNLS KVHVALPQVM
301: SSTRGYRTGS LGSERNYFYY ERFDQDGRLD RRPFSITPPY RTSSINHMSP GGSGGDKVRA SSPKSLLLAM RSPFDRLFLG KNNNVGENSS DHLRSCDATP
401: SNTV
Arabidopsis Description
ATL11RING-H2 finger protein ATL11 [Source:UniProtKB/Swiss-Prot;Acc:Q84W40]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.