CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

plastid 3
vacuole 3
extracellular 2
endoplasmic reticulum 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026494_P001	Maize	plastid	68.78	80.3
TraesCS2A01G501100.1	Wheat	plastid	45.15	54.31
TraesCS2D01G501500.1	Wheat	plastid	44.73	53.81
TraesCS2B01G529100.1	Wheat	plastid	44.3	53.3
CDY31686	Canola	nucleus	10.55	23.81
OQU92087	Sorghum	golgi, peroxisome, plastid	19.83	18.88
EER99041	Sorghum	endoplasmic reticulum, plasma membrane	27.0	15.53
EER92732	Sorghum	golgi	23.21	14.95
KXG39223	Sorghum	golgi, plasma membrane, plastid, vacuole	24.05	14.73
EER90301	Sorghum	endoplasmic reticulum, golgi, vacuole	24.89	14.68
EES18560	Sorghum	golgi, plasma membrane	24.05	14.5
EES05293	Sorghum	endoplasmic reticulum, golgi, plastid	21.1	13.23
KXG26428	Sorghum	plasma membrane	21.52	12.56
OQU85775	Sorghum	golgi, plasma membrane, vacuole	22.36	12.53
EES18815	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	21.1	10.57
OQU76061	Sorghum	cytosol, peroxisome, plasma membrane	22.36	9.72
CDY31685	Canola	cytosol	0.84	9.09

Protein Annotations

EnsemblPlants:OQU82489	EnsemblPlantsGene:SORBI_3006G248801	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF78
PFAM:PF13639	PFscan:PS50089	ProteinID:OQU82489	ProteinID:OQU82489.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000B8BAA3D	UniProt:A0A1Z5RFX9	MapMan:19.2.2.1.5.3.3	:

Description

hypothetical protein

Coordinates

chr6:-:58807638..58808840

Molecular Weight (calculated)

24984.9 Da

IEP (calculated)

7.429

GRAVY (calculated)

-0.013

Length

237 amino acids

Sequence
(BLAST)

001: MQSPSPTTKV APPLLPPPPP LAVDVAVIMG MLTAVLLALF LFLIYAKHCK ERGPGEGAGG LGLGFAPSSC DRCHSGLSSS AVGALPAVRF GDGDSGRATE
101: CAVCLGNFDA AELLRVLPAC RHAFHTECVD TWLLAHSTCP VCRRRVTRGH VDDTEPDDPA AGARTTVPGR RSAGDAEVQV EVVVHRAWDQ RWSTDGLVGR
201: VAYLEAGRHR RDDLGVLVIT AEGSRSSRSA AVTPRSC

Best Arabidopsis Sequence Match ( AT5G05810.1 )
(BLAST)

001: MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV

Arabidopsis Description

ATL43ATL43 [Source:UniProtKB/TrEMBL;Acc:A0A178ULT1]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.