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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 4
  • vacuole 3
  • plasma membrane 4
  • golgi 3
  • mitochondrion 2
  • nucleus 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d005936_P001 Maize plasma membrane 81.07 84.99
Zm00001d020789_P001 Maize plasma membrane 81.07 83.92
Os09t0468300-00 Rice golgi, plasma membrane 67.23 71.58
TraesCS5D01G254900.1 Wheat golgi, plasma membrane 67.96 71.43
HORVU5Hr1G069980.1 Barley plasma membrane 66.5 71.35
TraesCS5B01G245800.1 Wheat plasma membrane 67.72 70.45
TraesCS5A01G248100.1 Wheat plasma membrane 67.72 70.28
TraesCS3B01G549900.1 Wheat vacuole 49.27 64.44
TraesCS3D01G495500.1 Wheat vacuole 55.1 58.81
EES18560 Sorghum golgi, plasma membrane 52.18 54.71
KRG92822 Soybean endoplasmic reticulum, plasma membrane, vacuole 37.62 46.13
KRH33975 Soybean golgi, plasma membrane, vacuole 38.59 44.29
Bra010641.1-P Field mustard extracellular, golgi 30.34 40.58
CDX90377 Canola extracellular, golgi 30.34 40.58
KRG96857 Soybean vacuole 36.89 40.53
KRH68588 Soybean plasma membrane 35.68 40.16
AT4G09100.1 Thale cress extracellular 12.86 40.15
CDY39477 Canola extracellular 30.1 40.0
CDY53236 Canola plasma membrane 33.01 39.19
Bra036631.1-P Field mustard plasma membrane 32.28 38.0
CDY19719 Canola endoplasmic reticulum, plasma membrane, vacuole 32.28 38.0
CDX99986 Canola plasma membrane 32.04 37.82
OQU85775 Sorghum golgi, plasma membrane, vacuole 38.35 37.35
Bra040642.1-P Field mustard plasma membrane 34.95 37.31
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 27.43 37.17
CDX86162 Canola endoplasmic reticulum, plasma membrane, vacuole 27.43 37.17
AT5G27420.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 33.01 36.96
CDY18787 Canola plasma membrane 34.71 36.95
VIT_14s0128g00120.t01 Wine grape plasma membrane, plastid, vacuole 37.62 36.9
AT4G40070.1 Thale cress extracellular, golgi, mitochondrion, plastid 28.64 36.53
KXG26428 Sorghum plasma membrane 35.92 36.45
CDX80653 Canola plasma membrane 26.7 36.3
AT3G05200.1 Thale cress plasma membrane 34.95 36.18
CDX86163 Canola plasma membrane 26.21 36.0
KRH52998 Soybean endoplasmic reticulum, extracellular, plasma membrane 29.13 35.93
CDX82175 Canola extracellular 20.39 35.9
Solyc03g112340.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 34.47 35.68
Bra009962.1-P Field mustard mitochondrion, plastid 24.76 35.66
KRH62285 Soybean endoplasmic reticulum, plasma membrane, vacuole 29.37 35.59
CDX75097 Canola extracellular 11.89 35.51
KRH72413 Soybean cytosol, golgi, vacuole 32.04 35.29
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 33.01 35.23
PGSC0003DMT400046825 Potato endoplasmic reticulum, plasma membrane, vacuole 33.98 35.18
CDY25038 Canola plasma membrane 31.55 35.14
VIT_18s0001g06670.t01 Wine grape extracellular, plasma membrane, vacuole 33.74 34.92
CDY05577 Canola plasma membrane 32.04 34.55
Bra020591.1-P Field mustard plasma membrane 31.8 34.38
KRH16796 Soybean cytosol, endoplasmic reticulum, plasma membrane, plastid 31.55 34.3
Bra038386.1-P Field mustard extracellular 11.41 34.06
CDY48058 Canola extracellular 11.41 34.06
CDX84270 Canola cytosol, plastid, vacuole 25.24 33.23
EES05293 Sorghum endoplasmic reticulum, golgi, plastid 30.1 32.8
PGSC0003DMT400073575 Potato extracellular, plasma membrane 33.98 32.33
AT2G35000.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 29.61 32.28
Bra005375.1-P Field mustard cytosol, nucleus, plastid 24.51 32.27
CDY31656 Canola cytosol, endoplasmic reticulum, plastid 24.51 32.27
AT2G34990.2 Thale cress plasma membrane 25.0 31.79
PGSC0003DMT400005472 Potato endoplasmic reticulum, plasma membrane, vacuole 29.85 31.46
CDY31657 Canola extracellular, plasma membrane, plastid 27.91 31.25
EER92732 Sorghum golgi 27.91 31.25
CDX84269 Canola endoplasmic reticulum, plasma membrane, plastid 27.67 30.98
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 25.49 30.97
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 26.94 30.92
KRH72412 Soybean nucleus, plasma membrane, plastid 28.88 30.83
CDY05049 Canola plasma membrane 21.84 30.82
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 27.43 30.71
AT1G35330.1 Thale cress endoplasmic reticulum 24.27 30.49
CDX82179 Canola plasma membrane 25.97 30.48
AT4G09120.1 Thale cress plasma membrane 25.49 30.43
CDX90713 Canola extracellular, golgi, plasma membrane 25.0 30.38
AT1G72200.1 Thale cress plasma membrane 29.37 29.95
CDY70284 Canola plasma membrane 28.16 29.82
CDY62007 Canola golgi, plasma membrane 27.18 29.79
Solyc04g074820.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 28.4 29.77
OQU76061 Sorghum cytosol, peroxisome, plasma membrane 39.32 29.72
KRH16794 Soybean plasma membrane 28.16 29.59
Bra040855.1-P Field mustard golgi, plasma membrane 26.94 29.52
CDY21367 Canola golgi, plasma membrane 26.94 29.52
Bra008016.1-P Field mustard plasma membrane 28.4 29.03
CDY03651 Canola plasma membrane 28.4 29.03
CDX82176 Canola extracellular 25.49 28.77
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 24.27 28.74
AT4G09130.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 24.76 28.57
Bra012330.1-P Field mustard golgi, plasma membrane 23.79 28.49
AT4G09110.1 Thale cress endoplasmic reticulum, extracellular, golgi 20.87 28.48
CDY12022 Canola plasma membrane 24.27 28.33
AT1G22500.1 Thale cress plasma membrane 25.97 28.08
Bra028075.1-P Field mustard plasma membrane 24.03 28.05
Bra008015.1-P Field mustard plasma membrane 26.7 27.78
CDY03652 Canola plasma membrane 26.7 27.78
CDY03116 Canola plasma membrane 23.54 27.48
OQU82489 Sorghum plasma membrane, vacuole 15.53 27.0
CDY05145 Canola plasma membrane 19.42 26.94
CDY27787 Canola extracellular, plasma membrane, vacuole 19.66 26.91
Solyc12g087860.1.1 Tomato vacuole 24.03 26.54
OQU92087 Sorghum golgi, peroxisome, plastid 16.02 26.51
CDY70750 Canola extracellular, mitochondrion, nucleus 19.42 26.4
KXG39223 Sorghum golgi, plasma membrane, plastid, vacuole 24.76 26.36
PGSC0003DMT400045807 Potato plasma membrane 23.79 25.93
CDY12527 Canola extracellular, plasma membrane, vacuole 12.38 21.43
CDY25739 Canola endoplasmic reticulum, extracellular, plasma membrane 11.89 20.59
EER90301 Sorghum endoplasmic reticulum, golgi, vacuole 19.17 19.65
CDY50446 Canola mitochondrion 9.95 17.15
EES18815 Sorghum endoplasmic reticulum, extracellular, plasma membrane 18.45 16.07
Protein Annotations
MapMan:19.2.2.1.5.3.3Gene3D:3.30.40.10EntrezGene:8063734UniProt:C5X313EnsemblPlants:EER99041ProteinID:EER99041
ProteinID:EER99041.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016567
GO:GO:0016740GO:GO:0019538GO:GO:0043161GO:GO:0061630InterPro:IPR001841InterPro:IPR013083
PFAM:PF13639PFscan:PS50089PANTHER:PTHR14155PANTHER:PTHR14155:SF322SMART:SM00184EnsemblPlantsGene:SORBI_3002G232800
SUPFAM:SSF57850unigene:Sbi.19625SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0001A841FCRefSeq:XP_002462520.1
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:seg:::
Description
hypothetical protein
Coordinates
chr2:-:62378049..62379587
Molecular Weight (calculated)
43511.3 Da
IEP (calculated)
9.104
GRAVY (calculated)
-0.302
Length
412 amino acids
Sequence
(BLAST)
001: MDTTLLRSNG RRRLLPFFLL LLAAADLTAV QGQQGQQQQQ GGYYQQQSFS PSMAIVIVVL IAAFFFLGFF SIYVRHCYAG GDSSNSTDPA GPNGAAARSR
101: RQQRGLDAAV LESFPTMAYA DVKAHKAGKG ALECAVCLSE FDDDETLRLL PKCSHVFHPD CIDTWLASHV TCPVCRANLV PGADDNAPPA DGDDAPELPL
201: PAAPAQEPLP SPPTSAPPAA PAAAVVIDVD ETEEERIIRE ETDELMRIGS VKRALRSKSG RAPAGFPRSH STGHSLAVSA GTERFTLRLP DHVLRDLAAA
301: GKLQRTRSLV AFRSSRGGST RRGVSVRNGA GAGAGGEGSS RAGRSIRLGQ SGRWPSFLAR TFSTRLPAWG SRSTRRGVET DGSSKGGRAA GVVAGAKSVE
401: QDDQAGAPGQ RV
Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Arabidopsis Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.