CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

nucleus 2
golgi 1
mitochondrion 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014612_P001	Maize	peroxisome	91.54	92.7
Os06t0695900-01	Rice	endoplasmic reticulum, vacuole	80.6	81.2
TraesCSU01G093700.1	Wheat	plastid	78.61	79.4
TraesCS7B01G327800.1	Wheat	plastid	78.86	78.86
TraesCS7D01G420000.1	Wheat	plastid	78.61	78.8
HORVU7Hr1G098470.1	Barley	plastid	78.11	78.5
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	43.28	47.28
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	45.02	47.14
CDX98867	Canola	endoplasmic reticulum, golgi	37.06	42.21
KRH62179	Soybean	plasma membrane	35.07	41.96
CDX70126	Canola	plasma membrane	39.3	39.21
Bra009136.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	38.81	38.61
AT5G05810.1	Thale cress	endoplasmic reticulum, golgi	38.56	38.08
VIT_11s0052g00530.t01	Wine grape	plasma membrane	41.79	36.76
Solyc07g007440.1.1	Tomato	plasma membrane, vacuole	38.06	36.43
KRH70712	Soybean	endoplasmic reticulum, extracellular, vacuole	18.91	35.68
PGSC0003DMT400078951	Potato	plasma membrane	37.06	35.31
OQU82489	Sorghum	plasma membrane, vacuole	14.68	24.89
EES18815	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	28.11	23.89
EER99041	Sorghum	endoplasmic reticulum, plasma membrane	19.65	19.17
EER92732	Sorghum	golgi	17.16	18.75
KXG26428	Sorghum	plasma membrane	18.91	18.72
EES18560	Sorghum	golgi, plasma membrane	17.41	17.81
OQU92087	Sorghum	golgi, peroxisome, plastid	10.7	17.27
EES05293	Sorghum	endoplasmic reticulum, golgi, plastid	15.67	16.67
KXG39223	Sorghum	golgi, plasma membrane, plastid, vacuole	15.92	16.54
OQU85775	Sorghum	golgi, plasma membrane, vacuole	15.67	14.89
OQU76061	Sorghum	cytosol, peroxisome, plasma membrane	18.91	13.95

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	EntrezGene:8065131	UniProt:C5Z8T1	EnsemblPlants:EER90301	ProteinID:EER90301
ProteinID:EER90301.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF78	SMART:SM00184	EnsemblPlantsGene:SORBI_3010G246300
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0001A89763	RefSeq:XP_002438934.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:58599534..58602232

Molecular Weight (calculated)

41718.6 Da

IEP (calculated)

9.468

GRAVY (calculated)

-0.241

Length

402 amino acids

Sequence
(BLAST)

001: MERTRRLLLS DYDGAIESPL PSPPPPSSAT PFRPGVAVVV GILTSVFSIT FLLLLYAKHC KRSAAESSGP YGSAGGSGSS GAGGAGGGDR RNSGVDRAVV
101: ESLPVFRFGA LRGQKEGLEC AVCLGRFEPT EALRLLPKCR HGFHVECVDT WLDAHSTCPL CRSRVDPEDV LLLPEPPKPS TTGPPDPPET KVAAAKESAP
201: APPPAPAPTP VQSGRRISGR HSTGSVRAPG RVGPASRRSA DGGVAVGCFD GAAKARKDRV LLVEPAAMVA EPDPVALDRR FGHRILVSTA GGCEGETAPA
301: AQQRWSDLRP SDLMFVRAEF LVTEAGRYSC SAAVVNSGGN ARSAIGVRSL SELAAGVRRL PPIRAGACEG EPRAAGGGAR RWPGSSWWAP RGATPGRNGP
401: IA

Best Arabidopsis Sequence Match ( AT5G05810.1 )
(BLAST)

001: MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV

Arabidopsis Description

ATL43ATL43 [Source:UniProtKB/TrEMBL;Acc:A0A178ULT1]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.