Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g007440.1.1 | Tomato | plasma membrane, vacuole | 84.36 | 84.76 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 39.34 | 47.03 |
| KRH62179 | Soybean | plasma membrane | 36.26 | 45.54 |
| CDX70126 | Canola | plasma membrane | 42.18 | 44.17 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 42.42 | 43.98 |
| Bra009136.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 41.71 | 43.56 |
| VIT_11s0052g00530.t01 | Wine grape | plasma membrane | 45.26 | 41.79 |
| KRH70712 | Soybean | endoplasmic reticulum, extracellular, vacuole | 20.62 | 40.85 |
| Os06t0695900-01 | Rice | endoplasmic reticulum, vacuole | 37.44 | 39.6 |
| HORVU7Hr1G098470.1 | Barley | plastid | 36.26 | 38.25 |
| TraesCSU01G093700.1 | Wheat | plastid | 35.78 | 37.94 |
| Zm00001d014612_P001 | Maize | peroxisome | 35.55 | 37.78 |
| GSMUA_Achr9P13810_001 | Banana | golgi, mitochondrion, plastid, vacuole | 32.94 | 37.77 |
| TraesCS7D01G420000.1 | Wheat | plastid | 35.78 | 37.66 |
| TraesCS7B01G327800.1 | Wheat | plastid | 35.78 | 37.56 |
| EER90301 | Sorghum | endoplasmic reticulum, golgi, vacuole | 35.31 | 37.06 |
| GSMUA_Achr3P05190_001 | Banana | endoplasmic reticulum, golgi, plastid | 33.41 | 36.72 |
| PGSC0003DMT400070587 | Potato | plastid | 27.01 | 33.14 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 26.54 | 30.27 |
| PGSC0003DMT400001221 | Potato | vacuole | 10.66 | 24.06 |
| PGSC0003DMT400005472 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 18.48 | 19.95 |
| PGSC0003DMT400046825 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 17.77 | 18.84 |
| PGSC0003DMT400073575 | Potato | extracellular, plasma membrane | 18.01 | 17.55 |
| PGSC0003DMT400045807 | Potato | plasma membrane | 14.93 | 16.67 |
Protein Annotations
| EntrezGene:102582340 | MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M1D102 | PFAM:PF13639 | EnsemblPlantsGene:PGSC0003DMG400030722 | PGSC:PGSC0003DMG400030722 |
| EnsemblPlants:PGSC0003DMT400078951 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF78 | SMART:SM00184 | SUPFAM:SSF57850 |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0002969EFA | RefSeq:XP_006359505.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030722]
Coordinates
chr7:+:3386741..3388361
Molecular Weight (calculated)
47345.3 Da
IEP (calculated)
9.603
GRAVY (calculated)
-0.502
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICNVHFLS PSLWLFFFVM ITVIMNLSYA EENAQSPPPA LPPYYRSRGS PFRPSIAIVV AILTTIFSIV FMLLLYAKHC KREGTFGTTS GGLTNLHSSS
101: FRKNSGIDRT VIESLPVFRF GSLRGQKAEG LECAVCLNKF ESSEILRLLP KCKHAFHIEC VDTWLDAHST CPLCRYQVDP EDILLISHEN ERKSASSSIC
201: SSSPVKEKEK EKEKQRIYSS SSGRHSSAGE RGTSSSSLQI IVESPKQETP SFLNKRMSLD SWNFYRKKSK STKLSRKDGM LLNKKKAPEA EVEAVEERRL
301: EHRIIISGDE PELGTGSGSR HRWSDVEGCD RLYLRSEMIL SESRRYSGSR KRTAEMGSGR RVINERSVSE LTGMSRFRSN NEEERERKGA VKRWLDWISQ
401: SQNKSVSLSD SGAGAAASSS AT
101: FRKNSGIDRT VIESLPVFRF GSLRGQKAEG LECAVCLNKF ESSEILRLLP KCKHAFHIEC VDTWLDAHST CPLCRYQVDP EDILLISHEN ERKSASSSIC
201: SSSPVKEKEK EKEKQRIYSS SSGRHSSAGE RGTSSSSLQI IVESPKQETP SFLNKRMSLD SWNFYRKKSK STKLSRKDGM LLNKKKAPEA EVEAVEERRL
301: EHRIIISGDE PELGTGSGSR HRWSDVEGCD RLYLRSEMIL SESRRYSGSR KRTAEMGSGR RVINERSVSE LTGMSRFRSN NEEERERKGA VKRWLDWISQ
401: SQNKSVSLSD SGAGAAASSS AT
001: MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV
Arabidopsis Description
ATL43ATL43 [Source:UniProtKB/TrEMBL;Acc:A0A178ULT1]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.