Factsheet for PGSC0003DMT400000810

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g007320.1.1	Tomato	plasma membrane	90.81	88.19
PGSC0003DMT400070587	Potato	plastid	51.35	55.23
CDY05713	Canola	extracellular	17.84	44.9
KRH39345	Soybean	endoplasmic reticulum, vacuole	49.73	43.91
KRH76331	Soybean	endoplasmic reticulum	49.73	43.19
GSMUA_Achr6P26720_001	Banana	plasma membrane	40.54	42.73
CDX97460	Canola	endoplasmic reticulum, extracellular, plasma membrane	46.22	41.91
VIT_11s0016g03420.t01	Wine grape	plastid	52.97	41.79
Bra011068.1-P	Field mustard	endoplasmic reticulum, plasma membrane	46.49	41.25
CDY06859	Canola	endoplasmic reticulum, plasma membrane	46.22	41.01
CDY66475	Canola	endoplasmic reticulum, plasma membrane	45.14	40.83
CDY35230	Canola	endoplasmic reticulum, plasma membrane	45.95	40.77
Bra010349.1-P	Field mustard	endoplasmic reticulum, plasma membrane	45.95	40.48
CDX92900	Canola	endoplasmic reticulum, plasma membrane	44.86	40.0
Bra024178.1-P	Field mustard	endoplasmic reticulum, plasma membrane	45.41	40.0
CDY50930	Canola	endoplasmic reticulum, plasma membrane	45.41	40.0
AT4G28890.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	46.49	39.81
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	39.46	39.78
AT2G20030.1	Thale cress	endoplasmic reticulum, plasma membrane	41.35	39.23
GSMUA_Achr9P00230_001	Banana	vacuole	38.92	39.13
CDY35921	Canola	endoplasmic reticulum, extracellular, plasma membrane	38.65	38.54
CDY13888	Canola	plasma membrane	38.38	38.38
CDX81954	Canola	endoplasmic reticulum, plasma membrane, vacuole	37.84	36.55
GSMUA_Achr4P08120_001	Banana	plasma membrane	35.14	36.21
GSMUA_Achr6P22700_001	Banana	plasma membrane	22.97	35.71
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	34.05	31.98
TraesCS1A01G444900.1	Wheat	golgi, plasma membrane	33.24	31.3
Os05t0596500-01	Rice	endoplasmic reticulum, plasma membrane	32.43	31.17
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	31.89	30.18
TraesCS1B01G479700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	33.51	28.7
CDY05714	Canola	cytosol	16.49	28.64
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	33.51	28.57
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	31.08	28.26
EES18815	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	34.32	26.85
PGSC0003DMT400078951	Potato	plasma membrane	30.27	26.54
PGSC0003DMT400001221	Potato	vacuole	11.89	23.53
PGSC0003DMT400046825	Potato	endoplasmic reticulum, plasma membrane, vacuole	19.19	17.84
PGSC0003DMT400005472	Potato	endoplasmic reticulum, plasma membrane, vacuole	17.3	16.37
PGSC0003DMT400073575	Potato	extracellular, plasma membrane	18.65	15.94
PGSC0003DMT400045807	Potato	plasma membrane	15.68	15.34

Protein Annotations

EnsemblPlants:PGSC0003DMT400000810	EnsemblPlantsGene:PGSC0003DMG400000301	EntrezGene:102600705	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF95	PFAM:PF13639	PFscan:PS50089	PGSC:PGSC0003DMG400000301	RefSeq:XP_006353480.1	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0002958FDC	UniProt:M0ZHC9	MapMan:19.2.2.1.5.3.3	:

Description

Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000301]

Coordinates

chr12:+:4289335..4290771

Molecular Weight (calculated)

43319.9 Da

IEP (calculated)

8.023

GRAVY (calculated)

-0.387

Length

370 amino acids

Sequence
(BLAST)

001: MSNSDRRSNH IAIILVITIL QFLLLTIVKA NDYNTFQELP STQDEANNFR PSIAVVIGIL SIMFSLTFLL LLYAKFCRRS PQALHNAMQI DQDGLTTLPM
101: ARVSSGIDKT IIESLPFFRF SLLKGSRQGL ECAVCLSRFE DVEVLRLLPK CKHAFHTKCI DQWLEKHSSC PLCRHKVCIE DNSLLTYSNS FRFLRNDSNL
201: ELYVQREENC GSMSFKKNED SFFDKTEEKQ NIIDDDDHDM LHKFNHKIIV SDVVLKHRWS NVSSSDFMFL NTEMINDMTN NRFNSSLESR NYNNNIVSTS
301: NVLRQNEKRS MSEILICPRF DDFNTRNCNR DNSITCVEEK RMKLWLPIAR RTVQWFENRE KRYARQSFNV

Best Arabidopsis Sequence Match ( AT4G28890.1 )
(BLAST)

001: MYQIFFFFLP LLHSYASAQT PPPFRNGDLV ANFEPSLAVV TGVLAIMFAL TFVLLVYAKC CHIDLRSGSG DRRRHDRRLR QGIFFNRSTA SSDRFSGLDK
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV

Arabidopsis Description

ATL42E3 ubiquitin-protein ligase ATL42 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF85]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.