Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 4
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 92.37 | 84.03 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 82.19 | 81.98 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 89.31 | 80.88 |
| Os05t0596500-01 | Rice | endoplasmic reticulum, plasma membrane | 55.22 | 56.36 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 52.67 | 52.94 |
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 54.45 | 52.58 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 59.29 | 49.26 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 37.15 | 41.6 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 35.88 | 38.42 |
| CDY05713 | Canola | extracellular | 13.99 | 37.41 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 30.53 | 37.04 |
| PGSC0003DMT400070587 | Potato | plastid | 32.06 | 36.63 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 34.1 | 36.41 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 33.08 | 36.21 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 21.37 | 35.29 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.06 | 33.96 |
| CDY13888 | Canola | plasma membrane | 31.81 | 33.78 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 31.3 | 33.24 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 32.82 | 33.08 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 31.55 | 32.55 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 31.3 | 32.11 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 33.84 | 31.74 |
| KRH76331 | Soybean | endoplasmic reticulum | 34.1 | 31.46 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.32 | 31.13 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 32.82 | 30.94 |
| Bra011068.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 32.82 | 30.94 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 32.06 | 30.81 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 32.32 | 30.6 |
| KRH62061 | Soybean | plastid | 20.87 | 30.26 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 32.32 | 30.24 |
| Bra024178.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 32.32 | 30.24 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 32.06 | 30.22 |
| Bra010349.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 32.06 | 30.0 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 32.32 | 29.4 |
| KRH16295 | Soybean | plasma membrane | 29.52 | 29.37 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 34.86 | 29.21 |
| KRH52730 | Soybean | golgi, plasma membrane, vacuole | 27.99 | 26.83 |
| CDY05714 | Canola | cytosol | 14.5 | 26.76 |
| TraesCS2A01G501100.1 | Wheat | plastid | 12.98 | 25.89 |
| TraesCS1A01G192600.1 | Wheat | plastid | 10.94 | 20.38 |
| TraesCS3A01G051000.1 | Wheat | vacuole | 17.05 | 20.24 |
| TraesCS5A01G248100.1 | Wheat | plasma membrane | 18.83 | 18.64 |
| TraesCS2A01G318200.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 17.56 | 18.16 |
| TraesCS3A01G459700.1 | Wheat | vacuole | 15.27 | 17.54 |
| TraesCS4A01G104900.1 | Wheat | mitochondrion | 17.05 | 17.31 |
| TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 17.81 | 17.24 |
| TraesCS7A01G551400.1 | Wheat | golgi, plastid | 10.69 | 17.21 |
| TraesCS4A01G404600.1 | Wheat | plasma membrane | 15.27 | 16.9 |
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 16.79 | 16.3 |
| TraesCS7A01G176700.1 | Wheat | golgi | 16.29 | 15.42 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G444900.1 | EnsemblPlantsGene:TraesCS1A01G444900 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF220 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SignalP:SignalP-TM | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16486 | TMHMM:TMhelix | MapMan:19.2.2.1.5.3.3 |
Description
No Description!
Coordinates
chr1A:+:592830186..592831367
Molecular Weight (calculated)
42710.1 Da
IEP (calculated)
7.480
GRAVY (calculated)
-0.088
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKIMLLLLL VCWTQAQPAA EETPPGAGVK VSFRPSVAIV VGIFTMIFSL TFLLLMYAKF CHPANTPLLP ATTTASPSRA PAPDALIESE ASAGVGKAVI
101: ESLPFFRFAA LRGARQGLEC AVCLARFDDA DLLRLLPRCR HAFHLDCVDR WLHSSASCPL CRARVHPDDA DLGLKYAAAS ARFVFGAGDD AAAVAAGPAP
201: SSGRDLLAGI FVERVPSARF GGDAADDSNT KLDRHRHRIV VSDSVFKSRW SDLNSADLIA LDTEMLRSVS SGRFPYPYPD DDIILVGEEQ EHDRDDHDGA
301: RMSIEIQKKR LLEVESGSGS KGLGLGGCGG SEAAASRLVS SGVRSMSEMV RLPRVAVRAT EEEERARQRW VPIARRTARW FAARSREEDR LRV
101: ESLPFFRFAA LRGARQGLEC AVCLARFDDA DLLRLLPRCR HAFHLDCVDR WLHSSASCPL CRARVHPDDA DLGLKYAAAS ARFVFGAGDD AAAVAAGPAP
201: SSGRDLLAGI FVERVPSARF GGDAADDSNT KLDRHRHRIV VSDSVFKSRW SDLNSADLIA LDTEMLRSVS SGRFPYPYPD DDIILVGEEQ EHDRDDHDGA
301: RMSIEIQKKR LLEVESGSGS KGLGLGGCGG SEAAASRLVS SGVRSMSEMV RLPRVAVRAT EEEERARQRW VPIARRTARW FAARSREEDR LRV
001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
Arabidopsis Description
ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.