Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011068.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 96.88 | 96.88 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 96.64 | 96.64 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 86.33 | 83.33 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 83.21 | 82.62 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 80.58 | 82.35 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 80.1 | 81.66 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 80.58 | 80.96 |
| CDY05713 | Canola | extracellular | 23.02 | 65.31 |
| CDY13888 | Canola | plasma membrane | 56.35 | 63.51 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 55.16 | 61.99 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 55.88 | 60.84 |
| CDY05714 | Canola | cytosol | 28.3 | 55.4 |
| PGSC0003DMT400070587 | Potato | plastid | 43.41 | 52.62 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 40.53 | 52.16 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 46.76 | 46.54 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 41.01 | 46.22 |
| KRH76331 | Soybean | endoplasmic reticulum | 46.76 | 45.77 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 41.25 | 45.14 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 48.2 | 42.86 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 33.81 | 40.17 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 34.77 | 39.51 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 33.81 | 38.32 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 32.37 | 37.6 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 19.9 | 34.87 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 32.13 | 34.01 |
| TraesCS1A01G444900.1 | Wheat | golgi, plasma membrane | 30.94 | 32.82 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 29.98 | 31.97 |
| Os05t0596500-01 | Rice | endoplasmic reticulum, plasma membrane | 28.78 | 31.17 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 26.14 | 30.88 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.65 | 30.56 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 31.18 | 29.95 |
| CDX75097 | Canola | extracellular | 9.83 | 29.71 |
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 28.3 | 28.99 |
| CDY48058 | Canola | extracellular | 9.59 | 28.99 |
| CDX70126 | Canola | plasma membrane | 27.58 | 28.54 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 31.65 | 27.91 |
| CDY31686 | Canola | nucleus | 6.95 | 27.62 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 8.87 | 26.06 |
| CDX82175 | Canola | extracellular | 13.19 | 23.5 |
| CDX90377 | Canola | extracellular, golgi | 17.03 | 23.05 |
| CDY39477 | Canola | extracellular | 16.79 | 22.58 |
| CDY62419 | Canola | cytosol | 7.91 | 22.0 |
| CDY53236 | Canola | plasma membrane | 18.23 | 21.9 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 14.87 | 21.6 |
| CDY62007 | Canola | golgi, plasma membrane | 19.42 | 21.54 |
| CDY21367 | Canola | golgi, plasma membrane | 19.42 | 21.54 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 15.59 | 21.38 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 14.39 | 20.91 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 15.59 | 20.77 |
| CDX80653 | Canola | plasma membrane | 14.87 | 20.46 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 15.35 | 20.45 |
| CDY18787 | Canola | plasma membrane | 18.7 | 20.16 |
| CDX99986 | Canola | plasma membrane | 16.79 | 20.06 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 16.79 | 20.0 |
| CDY35174 | Canola | plasma membrane | 13.43 | 19.93 |
| CDY03202 | Canola | plasma membrane | 13.43 | 19.93 |
| CDX86163 | Canola | plasma membrane | 14.15 | 19.67 |
| CDY05049 | Canola | plasma membrane | 13.67 | 19.52 |
| CDY70284 | Canola | plasma membrane | 17.99 | 19.28 |
| CDX78812 | Canola | plasma membrane | 13.43 | 19.05 |
| CDY44502 | Canola | plasma membrane | 13.43 | 19.05 |
| CDY03651 | Canola | plasma membrane | 18.23 | 18.86 |
| CDY25038 | Canola | plasma membrane | 16.07 | 18.11 |
| CDX82176 | Canola | extracellular | 15.83 | 18.08 |
| CDY03116 | Canola | plasma membrane | 15.11 | 17.85 |
| CDY01502 | Canola | plasma membrane | 12.71 | 17.85 |
| CDX82179 | Canola | plasma membrane | 14.87 | 17.66 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 15.59 | 17.66 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 15.59 | 17.66 |
| CDY12022 | Canola | plasma membrane | 14.87 | 17.56 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 14.15 | 17.4 |
| CDY05577 | Canola | plasma membrane | 15.83 | 17.28 |
| CDY03652 | Canola | plasma membrane | 16.31 | 17.17 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 7.91 | 13.87 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 7.43 | 13.03 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 7.91 | 10.89 |
| CDY05145 | Canola | plasma membrane | 7.67 | 10.77 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 7.67 | 10.63 |
| CDY31685 | Canola | cytosol | 0.48 | 9.09 |
| CDY50446 | Canola | mitochondrion | 5.04 | 8.79 |
| CDX90435 | Canola | nucleus | 12.71 | 8.63 |
Protein Annotations
| EnsemblPlants:CDY06859 | EnsemblPlantsGene:GSBRNA2T00123133001 | Gene3D:3.30.40.10 | GO:A0A078F1V1 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF431 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY06859 | ProteinID:CDY06859.1 | SEG:seg | SignalP:SignalP-TM | SMART:SM00184 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI0004EF2318 | MapMan:19.2.2.1.5.3.3 | : | : | : |
Description
BnaC01g09580D
Coordinates
chrLK031973:+:850011..851264
Molecular Weight (calculated)
47874.8 Da
IEP (calculated)
8.493
GRAVY (calculated)
-0.527
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQIFIFFVT IFHSYYYVSA QPPAPPFRNG DLVTNFEPSL AVVTGVLAIM FTLTFVLLVY AKCCHIDLRS GTGDGRRQDR RLRQGIFFNR STNSSDRFSG
101: LDKTAIESLP LFRFSALKGS KQGLECSVCL SKFESVEILR LLPKCRHAFH VGCIDQWLEQ HATCPLCRAR VSVEDESSVH GNSFRFLNQS EVREDSSLEL
201: YIEREEEEEE RRQREELGGS SRFSIGGSFR KILKLGHKDK PLLDQHGEDK VMHKFNHRIL VSDVVFKNRW SNVSSSDLMF LNSEMVSSIS SERFSSMDRV
301: KRGDEEDRRG NLQVKEDNRM LENKLSENRD LGSKSRNVMI EPGRRSISDI TAVPRLSIVV HGDCSGSNAA SALENGGNET EERRRRLWLP IARKTAQWFA
401: NREKRHQINT THQHFDV
101: LDKTAIESLP LFRFSALKGS KQGLECSVCL SKFESVEILR LLPKCRHAFH VGCIDQWLEQ HATCPLCRAR VSVEDESSVH GNSFRFLNQS EVREDSSLEL
201: YIEREEEEEE RRQREELGGS SRFSIGGSFR KILKLGHKDK PLLDQHGEDK VMHKFNHRIL VSDVVFKNRW SNVSSSDLMF LNSEMVSSIS SERFSSMDRV
301: KRGDEEDRRG NLQVKEDNRM LENKLSENRD LGSKSRNVMI EPGRRSISDI TAVPRLSIVV HGDCSGSNAA SALENGGNET EERRRRLWLP IARKTAQWFA
401: NREKRHQINT THQHFDV
001: MYQIFFFFLP LLHSYASAQT PPPFRNGDLV ANFEPSLAVV TGVLAIMFAL TFVLLVYAKC CHIDLRSGSG DRRRHDRRLR QGIFFNRSTA SSDRFSGLDK
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV
Arabidopsis Description
ATL42E3 ubiquitin-protein ligase ATL42 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF85]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.