Factsheet for Solyc12g007320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000810	Potato	plasma membrane	88.19	90.81
Solyc05g018310.1.1	Tomato	extracellular, plasma membrane, vacuole	47.51	55.86
CDY05713	Canola	extracellular	18.11	46.94
KRH39345	Soybean	endoplasmic reticulum, vacuole	47.51	43.2
KRH76331	Soybean	endoplasmic reticulum	48.29	43.19
CDX97460	Canola	endoplasmic reticulum, extracellular, plasma membrane	45.41	42.4
VIT_11s0016g03420.t01	Wine grape	plastid	51.71	42.0
GSMUA_Achr6P26720_001	Banana	plasma membrane	38.58	41.88
Bra011068.1-P	Field mustard	endoplasmic reticulum, plasma membrane	45.41	41.49
CDY06859	Canola	endoplasmic reticulum, plasma membrane	45.14	41.25
CDY66475	Canola	endoplasmic reticulum, plasma membrane	44.09	41.08
CDY35230	Canola	endoplasmic reticulum, plasma membrane	44.62	40.77
Bra010349.1-P	Field mustard	endoplasmic reticulum, plasma membrane	44.88	40.71
AT4G28890.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	45.93	40.51
AT2G20030.1	Thale cress	endoplasmic reticulum, plasma membrane	40.94	40.0
CDY13888	Canola	plasma membrane	38.58	39.73
CDY50930	Canola	endoplasmic reticulum, plasma membrane	43.57	39.52
Bra024178.1-P	Field mustard	endoplasmic reticulum, plasma membrane	43.57	39.52
CDX92900	Canola	endoplasmic reticulum, plasma membrane	43.04	39.52
CDY35921	Canola	endoplasmic reticulum, extracellular, plasma membrane	38.32	39.35
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	37.53	38.96
GSMUA_Achr9P00230_001	Banana	vacuole	37.27	38.59
CDX81954	Canola	endoplasmic reticulum, plasma membrane, vacuole	37.27	37.08
GSMUA_Achr4P08120_001	Banana	plasma membrane	34.91	37.05
GSMUA_Achr6P22700_001	Banana	plasma membrane	22.31	35.71
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	33.07	31.98
Os05t0596500-01	Rice	endoplasmic reticulum, plasma membrane	32.28	31.95
TraesCS1A01G444900.1	Wheat	golgi, plasma membrane	32.55	31.55
CDY05714	Canola	cytosol	16.54	29.58
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	29.66	28.9
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	32.81	28.8
TraesCS1B01G479700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	32.55	28.7
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	29.13	27.27
Solyc07g007440.1.1	Tomato	plasma membrane, vacuole	29.13	26.43
EES18815	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	32.02	25.79
Solyc11g066510.1.1	Tomato	nucleus	12.86	20.76
Solyc08g076800.2.1	Tomato	plastid	14.44	19.43
Solyc08g005110.1.1	Tomato	plastid	13.12	18.25
Solyc03g112340.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	18.64	17.84
Solyc04g074820.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	17.06	16.54
Solyc12g087860.1.1	Tomato	vacuole	15.22	15.55

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	UniProt:K4DBR9	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF95
SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc12g007320.1	EnsemblPlants:Solyc12g007320.1.1	TMHMM:TMhelix	UniParc:UPI00027693F9
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

No Description!

Coordinates

chr12:-:1709310..1710455

Molecular Weight (calculated)

44593.5 Da

IEP (calculated)

8.621

GRAVY (calculated)

-0.392

Length

381 amino acids

Sequence
(BLAST)

001: MSNSDRRSNH IAIILVITIL QFLLLNIVKA HDYNTFQELP STQDEANFRP SIAVVIGILS IMFSLTFLLL LYAKFCRRSS LPLHNAMQMD QDRLTTLPMA
101: RVSSGIDKTI IESLPFFRFS LLKGSRQGLE CAVCLSKFED VEVLRLLPKC KHAFHINCID QWLEKHSSCP LCRHKVRVED NSLLTYSNSF RFLREDSNFE
201: LYVQRESNSQ NGVNRSSRFS IGNMSLKINE DSFLDQTEEN QNIIHHDHDD MLHKFNHKIV VSDVVLKHRW SNVSSSDFMF LNTQMINDMT NNRFNSSLES
301: RNCNKNIVSS SNVLRQNEKR SMSEILICPR FDDYNTRNCN RDNSITCVEE KRMKLWLPIA KRTVQWFENR EKRYARQSFN V

Best Arabidopsis Sequence Match ( AT4G28890.1 )
(BLAST)

001: MYQIFFFFLP LLHSYASAQT PPPFRNGDLV ANFEPSLAVV TGVLAIMFAL TFVLLVYAKC CHIDLRSGSG DRRRHDRRLR QGIFFNRSTA SSDRFSGLDK
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV

Arabidopsis Description

ATL42E3 ubiquitin-protein ligase ATL42 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF85]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.