Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- endoplasmic reticulum 4
- extracellular 4
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 95.59 | 95.35 |
| Bra010349.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 95.83 | 93.1 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 82.35 | 80.58 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 81.62 | 79.86 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 81.13 | 78.81 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 80.15 | 78.8 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 79.66 | 75.23 |
| CDY05713 | Canola | extracellular | 23.53 | 65.31 |
| CDY13888 | Canola | plasma membrane | 55.88 | 61.62 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 55.64 | 61.19 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 56.13 | 59.79 |
| CDY05714 | Canola | cytosol | 27.94 | 53.52 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 40.69 | 51.23 |
| PGSC0003DMT400070587 | Potato | plastid | 42.65 | 50.58 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 47.55 | 46.3 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 41.91 | 46.22 |
| KRH76331 | Soybean | endoplasmic reticulum | 47.55 | 45.54 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 42.4 | 45.41 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 47.79 | 41.58 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 34.31 | 39.89 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 34.8 | 38.69 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 33.09 | 37.6 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 33.33 | 36.96 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 20.59 | 35.29 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 31.37 | 32.49 |
| TraesCS1A01G444900.1 | Wheat | golgi, plasma membrane | 31.13 | 32.32 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 29.9 | 31.2 |
| Os05t0596500-01 | Rice | endoplasmic reticulum, plasma membrane | 28.92 | 30.65 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 25.49 | 29.46 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.13 | 29.4 |
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 28.92 | 28.99 |
| CDX75097 | Canola | extracellular | 9.8 | 28.99 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 30.64 | 28.8 |
| CDY48058 | Canola | extracellular | 9.56 | 28.26 |
| CDY31686 | Canola | nucleus | 7.11 | 27.62 |
| CDX70126 | Canola | plasma membrane | 27.21 | 27.54 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 31.37 | 27.06 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 9.07 | 26.06 |
| CDX82175 | Canola | extracellular | 13.97 | 24.36 |
| CDX90377 | Canola | extracellular, golgi | 16.67 | 22.08 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 16.18 | 21.71 |
| CDY39477 | Canola | extracellular | 16.42 | 21.61 |
| CDY21367 | Canola | golgi, plasma membrane | 19.85 | 21.54 |
| CDY62007 | Canola | golgi, plasma membrane | 19.85 | 21.54 |
| CDY62419 | Canola | cytosol | 7.84 | 21.33 |
| CDY53236 | Canola | plasma membrane | 18.14 | 21.33 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 14.71 | 20.91 |
| CDX80653 | Canola | plasma membrane | 15.44 | 20.79 |
| CDY70284 | Canola | plasma membrane | 19.36 | 20.31 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 14.22 | 20.21 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 15.44 | 20.13 |
| CDX86163 | Canola | plasma membrane | 14.71 | 20.0 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 15.2 | 19.81 |
| CDX99986 | Canola | plasma membrane | 16.91 | 19.77 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 16.91 | 19.71 |
| CDY18787 | Canola | plasma membrane | 18.63 | 19.64 |
| CDY03651 | Canola | plasma membrane | 19.36 | 19.6 |
| CDX78812 | Canola | plasma membrane | 13.97 | 19.39 |
| CDY44502 | Canola | plasma membrane | 13.97 | 19.39 |
| CDY05049 | Canola | plasma membrane | 13.48 | 18.84 |
| CDX82176 | Canola | extracellular | 16.67 | 18.63 |
| CDY35174 | Canola | plasma membrane | 12.75 | 18.51 |
| CDY03202 | Canola | plasma membrane | 12.75 | 18.51 |
| CDX82179 | Canola | plasma membrane | 15.44 | 17.95 |
| CDY01502 | Canola | plasma membrane | 12.99 | 17.85 |
| CDY25038 | Canola | plasma membrane | 15.93 | 17.57 |
| CDY03116 | Canola | plasma membrane | 15.2 | 17.56 |
| CDY12022 | Canola | plasma membrane | 14.95 | 17.28 |
| CDY03652 | Canola | plasma membrane | 16.67 | 17.17 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 15.44 | 17.12 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 15.44 | 17.12 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 14.22 | 17.11 |
| CDY05577 | Canola | plasma membrane | 15.93 | 17.02 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 8.33 | 14.29 |
| CDY31685 | Canola | cytosol | 0.74 | 13.64 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 7.84 | 13.45 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 7.84 | 10.56 |
| CDY05145 | Canola | plasma membrane | 7.35 | 10.1 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 7.35 | 9.97 |
| CDX90435 | Canola | nucleus | 12.99 | 8.63 |
| CDY50446 | Canola | mitochondrion | 4.9 | 8.37 |
Protein Annotations
| EnsemblPlants:CDX97460 | EnsemblPlantsGene:GSBRNA2T00104632001 | Gene3D:3.30.40.10 | GO:A0A078E5X0 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF431 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX97460 | ProteinID:CDX97460.1 | SEG:seg | SignalP:SignalP-TM | SMART:SM00184 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI0004EF3A40 | MapMan:19.2.2.1.5.3.3 | : | : | : |
Description
BnaC08g13250D
Coordinates
chrLK031899:-:853079..854338
Molecular Weight (calculated)
47016.8 Da
IEP (calculated)
8.635
GRAVY (calculated)
-0.458
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQIFFFFFL TTFHSYYYVS AQPPAPPLSN GDLVANFEPS LAIVTGVLAI MFALTFVLLV YAKCCHMDLL SGSGDGRRQD RLIRQGFFFN RSTNSSARFS
101: GLDKTAIESL PMFRFSALKG SKQGLECSVC LSKFESVEIL RLLPKCRHAF HIGCIDQWLE QHATCPLCRN RVSVEEESSV YINSFRFLNE SARREDSSLE
201: LYIEREEEEE RRRRQREEVG SSSRFSIGGS FRKILKLGHK EKPLLEQQGN DKDENKVMHK FNHRIFVSDV VFKNRWSNVS SSDLMFLNSE MVSSISSERF
301: SFRRSNEEDQ RGNLRVEEDM ESKLSSMKTM LLSESNDSGR RSVSEITTVP RLSIAVHGDC SGPTAATASE TEERRRRLWL PIARKTAQWF ANREKRNQIN
401: TTFQHFNV
101: GLDKTAIESL PMFRFSALKG SKQGLECSVC LSKFESVEIL RLLPKCRHAF HIGCIDQWLE QHATCPLCRN RVSVEEESSV YINSFRFLNE SARREDSSLE
201: LYIEREEEEE RRRRQREEVG SSSRFSIGGS FRKILKLGHK EKPLLEQQGN DKDENKVMHK FNHRIFVSDV VFKNRWSNVS SSDLMFLNSE MVSSISSERF
301: SFRRSNEEDQ RGNLRVEEDM ESKLSSMKTM LLSESNDSGR RSVSEITTVP RLSIAVHGDC SGPTAATASE TEERRRRLWL PIARKTAQWF ANREKRNQIN
401: TTFQHFNV
001: MYQIFFFFLP LLHSYASAQT PPPFRNGDLV ANFEPSLAVV TGVLAIMFAL TFVLLVYAKC CHIDLRSGSG DRRRHDRRLR QGIFFNRSTA SSDRFSGLDK
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV
Arabidopsis Description
ATL42E3 ubiquitin-protein ligase ATL42 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF85]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.