Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13888 | Canola | plasma membrane | 89.82 | 92.97 |
| CDY05713 | Canola | extracellular | 33.42 | 87.07 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 76.5 | 78.98 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 72.58 | 71.28 |
| CDY05714 | Canola | cytosol | 37.34 | 67.14 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 61.36 | 56.35 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 59.79 | 56.13 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 60.84 | 55.88 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 59.27 | 55.5 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 59.53 | 54.29 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 57.44 | 53.01 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 40.99 | 48.46 |
| PGSC0003DMT400070587 | Potato | plastid | 42.3 | 47.09 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 44.13 | 40.33 |
| KRH76331 | Soybean | endoplasmic reticulum | 43.6 | 39.2 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 36.55 | 37.84 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 37.08 | 37.27 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 33.94 | 36.21 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 33.16 | 36.18 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 33.68 | 35.05 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 42.82 | 34.97 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 33.16 | 34.6 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 19.84 | 31.93 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 32.38 | 31.47 |
| TraesCS1A01G444900.1 | Wheat | golgi, plasma membrane | 32.11 | 31.3 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 30.29 | 29.67 |
| Os05t0596500-01 | Rice | endoplasmic reticulum, plasma membrane | 29.77 | 29.61 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 26.89 | 29.18 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 32.9 | 29.17 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 32.38 | 28.57 |
| CDX70126 | Canola | plasma membrane | 29.77 | 28.29 |
| CDY31686 | Canola | nucleus | 7.57 | 27.62 |
| CDX75097 | Canola | extracellular | 9.92 | 27.54 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 10.18 | 27.46 |
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 28.98 | 27.27 |
| CDY48058 | Canola | extracellular | 9.66 | 26.81 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 32.38 | 26.22 |
| CDX82175 | Canola | extracellular | 15.4 | 25.21 |
| CDX90377 | Canola | extracellular, golgi | 17.23 | 21.43 |
| CDY62419 | Canola | cytosol | 8.36 | 21.33 |
| CDY39477 | Canola | extracellular | 16.97 | 20.97 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 15.4 | 20.56 |
| CDY53236 | Canola | plasma membrane | 18.54 | 20.46 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 15.14 | 20.21 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 15.93 | 20.07 |
| CDY05049 | Canola | plasma membrane | 14.88 | 19.52 |
| CDY35174 | Canola | plasma membrane | 14.1 | 19.22 |
| CDY03202 | Canola | plasma membrane | 14.1 | 19.22 |
| CDX80653 | Canola | plasma membrane | 15.14 | 19.14 |
| CDX86163 | Canola | plasma membrane | 14.88 | 19.0 |
| CDX99986 | Canola | plasma membrane | 17.23 | 18.91 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 16.97 | 18.57 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 15.14 | 18.53 |
| CDY01502 | Canola | plasma membrane | 14.36 | 18.52 |
| CDY21367 | Canola | golgi, plasma membrane | 18.02 | 18.35 |
| CDY18787 | Canola | plasma membrane | 18.54 | 18.35 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 14.88 | 18.21 |
| CDY62007 | Canola | golgi, plasma membrane | 17.75 | 18.09 |
| CDX78812 | Canola | plasma membrane | 13.84 | 18.03 |
| CDY44502 | Canola | plasma membrane | 13.84 | 18.03 |
| CDX82176 | Canola | extracellular | 16.97 | 17.81 |
| CDY25038 | Canola | plasma membrane | 16.97 | 17.57 |
| CDY70284 | Canola | plasma membrane | 17.75 | 17.48 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 15.14 | 17.11 |
| CDY05577 | Canola | plasma membrane | 16.97 | 17.02 |
| CDY03116 | Canola | plasma membrane | 15.67 | 17.0 |
| CDY03651 | Canola | plasma membrane | 17.75 | 16.87 |
| CDY12022 | Canola | plasma membrane | 15.4 | 16.71 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 15.93 | 16.58 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 15.67 | 16.3 |
| CDX82179 | Canola | plasma membrane | 14.88 | 16.24 |
| CDY03652 | Canola | plasma membrane | 16.71 | 16.16 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 6.53 | 10.5 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 6.27 | 10.08 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 7.57 | 9.57 |
| CDY31685 | Canola | cytosol | 0.52 | 9.09 |
| CDY05145 | Canola | plasma membrane | 7.05 | 9.09 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 7.05 | 8.97 |
| CDX90435 | Canola | nucleus | 14.1 | 8.79 |
| CDY50446 | Canola | mitochondrion | 3.66 | 5.86 |
Protein Annotations
| EnsemblPlants:CDX81954 | EnsemblPlantsGene:GSBRNA2T00136922001 | Gene3D:3.30.40.10 | GO:A0A078D113 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF431 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX81954 | ProteinID:CDX81954.1 | SEG:seg | SignalP:SignalP-TM | SMART:SM00184 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI0004EEB8BE | MapMan:19.2.2.1.5.3.3 | : | : | : |
Description
BnaC08g36470D
Coordinates
chrLK031826:+:1637996..1639210
Molecular Weight (calculated)
43260.5 Da
IEP (calculated)
7.410
GRAVY (calculated)
-0.299
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPPKAISTL FFSIFFFLDY VSAQSPPPPP FLYAANGLFQ PSLAIITGVF SIVFTLTFVL LIYAKCFHND LRSETYEDGE IRRLDRLWQG LFSQSSRLSG
101: LDKTAIESLP FFRFSALKGS KQGLECSVCL SKFEDVEILR LLPKCKHAFH IECIDEWLEQ HATCPLCRNR VSIEDELSVF GGGSNNSMRI MSQLSESREE
201: ESSMEILNFG KNDNSLSLVE QGNEKCLHKF NHRIVVSDAV FKNRWSNVTP ADLTFLTSNM LSSTSSDRFS SIDRVQRGDL RDKEEIDMKK MVDNKDSTRR
301: SVSEITAVPR LSVVTTAARE NAVGGSNSGL DASTASTSRS DVIAAMEERR RRMWLPIARK TAQWFVNREK KNELKTTGQD LNV
101: LDKTAIESLP FFRFSALKGS KQGLECSVCL SKFEDVEILR LLPKCKHAFH IECIDEWLEQ HATCPLCRNR VSIEDELSVF GGGSNNSMRI MSQLSESREE
201: ESSMEILNFG KNDNSLSLVE QGNEKCLHKF NHRIVVSDAV FKNRWSNVTP ADLTFLTSNM LSSTSSDRFS SIDRVQRGDL RDKEEIDMKK MVDNKDSTRR
301: SVSEITAVPR LSVVTTAARE NAVGGSNSGL DASTASTSRS DVIAAMEERR RRMWLPIARK TAQWFVNREK KNELKTTGQD LNV
001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
Arabidopsis Description
ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.