Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G444900.1 | Wheat | golgi, plasma membrane | 84.03 | 92.37 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 78.7 | 86.29 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 86.11 | 85.71 |
| Os05t0596500-01 | Rice | endoplasmic reticulum, plasma membrane | 51.62 | 57.92 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 49.77 | 54.99 |
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 50.93 | 54.05 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 56.02 | 51.16 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 33.8 | 41.6 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 32.64 | 38.42 |
| PGSC0003DMT400070587 | Potato | plastid | 30.09 | 37.79 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 28.24 | 37.65 |
| CDY05713 | Canola | extracellular | 12.73 | 37.41 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 30.32 | 36.49 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 30.79 | 36.14 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 19.44 | 35.29 |
| CDY13888 | Canola | plasma membrane | 29.63 | 34.59 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 29.17 | 33.96 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 30.32 | 33.59 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 28.7 | 33.51 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 32.41 | 33.41 |
| KRH76331 | Soybean | endoplasmic reticulum | 32.87 | 33.33 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 29.17 | 32.9 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 28.7 | 32.55 |
| Bra011068.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 30.79 | 31.89 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 30.56 | 31.65 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 30.09 | 31.18 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 29.4 | 31.13 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 29.86 | 31.08 |
| Bra024178.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 30.09 | 30.95 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 30.09 | 30.95 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 29.17 | 30.81 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 30.32 | 30.32 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 32.64 | 30.06 |
| Bra010349.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 29.17 | 30.0 |
| KRH62061 | Soybean | plastid | 18.75 | 29.89 |
| KRH16295 | Soybean | plasma membrane | 27.31 | 29.87 |
| CDY05714 | Canola | cytosol | 13.66 | 27.7 |
| TraesCS7B01G327800.1 | Wheat | plastid | 25.69 | 27.61 |
| KRH52730 | Soybean | golgi, plasma membrane, vacuole | 25.69 | 27.07 |
| TraesCS2B01G529100.1 | Wheat | plastid | 12.04 | 26.4 |
| TraesCS7B01G475300.1 | Wheat | endoplasmic reticulum, plasma membrane | 9.03 | 20.31 |
| TraesCS3B01G060000.1 | Wheat | mitochondrion | 10.65 | 19.74 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 18.06 | 19.7 |
| TraesCS5B01G442500.1 | Wheat | golgi | 14.58 | 18.58 |
| TraesCS2B01G336300.1 | Wheat | extracellular, golgi, plasma membrane | 16.2 | 18.42 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 16.67 | 17.82 |
| TraesCS3B01G499500.1 | Wheat | vacuole | 14.12 | 17.58 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 14.35 | 17.46 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 15.74 | 16.92 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 12.04 | 16.51 |
| TraesCS7B01G081700.1 | Wheat | golgi | 15.05 | 15.7 |
| TraesCS4B01G199100.1 | Wheat | plastid | 16.2 | 15.66 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G479700.1 | EnsemblPlantsGene:TraesCS1B01G479700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF220 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SignalP:SignalP-TM | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16486 | TMHMM:TMhelix | MapMan:19.2.2.1.5.3.3 |
Description
No Description!
Coordinates
chr1B:+:687404215..687405825
Molecular Weight (calculated)
46194.9 Da
IEP (calculated)
7.286
GRAVY (calculated)
-0.094
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTMLLLLL CATIAAHAHA QAPTQPAAEE TPPGAGVKVS FRPSVAIVVG IFTMIFSLTF LLLMYAKFCH PANTPLLPAT TTASPSRAPA PDALIESEAS
101: AGVGKAVIES LPFFRFAALR GARQGLECAV CLARFDDADL LRLLPRCRHA FHLDCVDRWL HSSASCPLCR ARVHPDDADL GLKYAAASAR FVFGAGDNAA
201: AVGAAPAPSS GRDLLAGIFV ERVPSARFGG IGDAGAGDDA GAADESNSKL DRHRHRIVVS DSVFKSRWSD LNSADLIALD TEMLRSVSSG RFPYPYPDDD
301: IIFLGDEPPE ERGHRDDHDG AGVSIEIERK RLLDVESGSG SKAAPSLVRG LGGCGGSDAV EPSSVRAASR LVSSGVRSMS EIVRLPRVAV RTEEEERARQ
401: RWVPIARRTA RWLASRSRSR EEDVNAADRL RV
101: AGVGKAVIES LPFFRFAALR GARQGLECAV CLARFDDADL LRLLPRCRHA FHLDCVDRWL HSSASCPLCR ARVHPDDADL GLKYAAASAR FVFGAGDNAA
201: AVGAAPAPSS GRDLLAGIFV ERVPSARFGG IGDAGAGDDA GAADESNSKL DRHRHRIVVS DSVFKSRWSD LNSADLIALD TEMLRSVSSG RFPYPYPDDD
301: IIFLGDEPPE ERGHRDDHDG AGVSIEIERK RLLDVESGSG SKAAPSLVRG LGGCGGSDAV EPSSVRAASR LVSSGVRSMS EIVRLPRVAV RTEEEERARQ
401: RWVPIARRTA RWLASRSRSR EEDVNAADRL RV
001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
Arabidopsis Description
ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.