Factsheet for TraesCS3B01G060000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G007990.1	Barley	cytosol	22.75	59.55
GSMUA_Achr8P09280_001	Banana	cytosol	9.01	43.75
TraesCS7B01G475300.1	Wheat	endoplasmic reticulum, plasma membrane	25.75	31.25
TraesCS3A01G051000.1	Wheat	vacuole	44.21	31.12
TraesCS3D01G050600.1	Wheat	plasma membrane	45.06	30.09
TraesCS2B01G336300.1	Wheat	extracellular, golgi, plasma membrane	44.64	27.37
TraesCS2B01G529100.1	Wheat	plastid	18.88	22.34
KRH13267	Soybean	plasma membrane	14.59	20.86
TraesCS5B01G442500.1	Wheat	golgi	24.89	17.11
TraesCS5B01G245800.1	Wheat	plasma membrane	28.76	16.92
TraesCS3B01G499500.1	Wheat	vacuole	23.61	15.85
KRH38505	Soybean	plasma membrane, vacuole	18.88	15.44
TraesCS6B01G151000.1	Wheat	extracellular, golgi, plasma membrane	26.61	15.35
TraesCS4B01G304400.1	Wheat	plasma membrane	23.18	15.21
TraesCS6B01G346000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	25.75	14.93
TraesCS3B01G549900.1	Wheat	vacuole	18.45	13.65
TraesCS7B01G081700.1	Wheat	golgi	23.61	13.29
TraesCS4B01G199100.1	Wheat	plastid	21.46	11.19
TraesCS7B01G327800.1	Wheat	plastid	18.45	10.7
TraesCS1B01G479700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	19.74	10.65

Protein Annotations

EnsemblPlants:TraesCS3B01G060000.1	EnsemblPlantsGene:TraesCS3B01G060000	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF414	PFAM:PF13639	PFscan:PS50089	SEG:seg
SignalP:SignalP-noTM	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	MapMan:19.2.2.1.5.3.3	:

Description

No Description!

Coordinates

chr3B:+:31798043..31800226

Molecular Weight (calculated)

25094.8 Da

IEP (calculated)

7.330

GRAVY (calculated)

-0.453

Length

233 amino acids

Sequence
(BLAST)

001: MPHLLTRCVF SRLPVQWLWA CGDGGARAPP RPPLHPRRQH KHRSAFAATT GAAAARPGTA DEATAVRRSL HPALLLRVHH PVPPRRRPRR AAGGGVSRRG
101: KHGLDLAVVA TFPIVPYREI KEHKIGSGAL ECAVCLTEFE DDDDMRLLPH CSHAFHPECI DPWLESRTTC PLCRANLEKP PPPLTPEEGA QWEKEEAASV
201: VTPEEPAASA VAGAPGQDDA VGDAEGAGQL PEG

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.