Factsheet for TraesCS3D01G050600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G007990.1	Barley	cytosol	24.07	94.38
TraesCS3A01G051000.1	Wheat	vacuole	86.82	91.54
TraesCS2D01G315800.1	Wheat	golgi	60.74	56.84
GSMUA_Achr8P09280_001	Banana	cytosol	6.88	50.0
TraesCS3B01G060000.1	Wheat	mitochondrion	30.09	45.06
TraesCS7D01G537300.1	Wheat	golgi, nucleus, plasma membrane	25.79	42.25
TraesCS7D01G538000.1	Wheat	golgi	27.22	37.11
TraesCS5D01G254900.1	Wheat	golgi, plasma membrane	34.96	31.12
TraesCS5D01G446700.1	Wheat	golgi	29.8	30.77
TraesCS3D01G495500.1	Wheat	vacuole	33.52	30.31
TraesCS3D01G452500.1	Wheat	golgi, plasma membrane, vacuole	27.79	28.03
TraesCS7D01G178000.1	Wheat	golgi	31.23	26.72
TraesCS6D01G294800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	30.95	26.67
TraesCS6D01G113000.1	Wheat	golgi	30.37	26.43
TraesCS2D01G501500.1	Wheat	plastid	14.33	25.38
KRH13267	Soybean	plasma membrane	11.75	25.15
TraesCS4D01G302600.1	Wheat	plasma membrane	25.5	25.07
KRH38505	Soybean	plasma membrane, vacuole	20.34	24.91
TraesCS4D01G200100.1	Wheat	plastid	26.65	22.46
TraesCS7D01G420000.1	Wheat	plastid	18.34	15.96
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	19.2	15.44

Protein Annotations

EnsemblPlants:TraesCS3D01G050600.1	EnsemblPlantsGene:TraesCS3D01G050600	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR14155	PANTHER:PTHR14155:SF414	PFAM:PF13639	PFscan:PS50089
SEG:seg	SignalP:SignalP-TM	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	TMHMM:TMhelix
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:19880570..19881619

Molecular Weight (calculated)

37574.1 Da

IEP (calculated)

7.219

GRAVY (calculated)

-0.223

Length

349 amino acids

Sequence
(BLAST)

001: MGVRAHLLVV LCILVAATST AQLLPPPPVL PPLGPAPQPK PPLFGRAMTM VITVVAVAVG VLFLLLFLCA YITQCRLVED HDEPQGGSVA PGGVSRRGKR
101: GLDPAVVATF PIVPYREIKE HKIGSGALEC AVCLTEFEDA DDLRLLPHCS HAFHPDCIDP WLETRTTCPL CRANLEKPPP PAAAPAHSSP PHAVVAMPVQ
201: QDEPKEDSDK DDRKEEAAEL EKLRRERRAA RLLRSHSTGH SAGQCDCEDH ERFTLRLPEQ VREEVLSRCC ARPAVESLTG GGCAVGERGG SFRDAGGAAA
301: TGGDCSRGDR RWQALLARTM PWARARSTRK VRDSSIRDDV VAATTAASP

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.