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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, nucleus

Predictor Summary:
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, nucleus, plasma membrane
Any Predictor:golgi, nucleus, plasma membrane
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:nucleus
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7B01G475300.1 Wheat endoplasmic reticulum, plasma membrane 81.22 90.1
TraesCS7D01G538000.1 Wheat golgi 66.2 55.08
GSMUA_Achr8P09280_001 Banana cytosol 8.92 39.58
Os04t0450300-00 Rice endoplasmic reticulum, golgi 44.6 28.02
TraesCS2D01G315800.1 Wheat golgi 48.36 27.61
Zm00001d003499_P001 Maize endoplasmic reticulum, golgi, plasma membrane 47.42 26.03
TraesCS3D01G050600.1 Wheat plasma membrane 42.25 25.79
KXG26428 Sorghum plasma membrane 47.89 25.12
TraesCS2D01G501500.1 Wheat plastid 19.25 20.81
KRH13267 Soybean plasma membrane 13.62 17.79
TraesCS5D01G254900.1 Wheat golgi, plasma membrane 30.99 16.84
TraesCS3D01G495500.1 Wheat vacuole 29.58 16.32
TraesCS5D01G446700.1 Wheat golgi 25.82 16.27
TraesCS6D01G113000.1 Wheat golgi 30.52 16.21
TraesCS3D01G452500.1 Wheat golgi, plasma membrane, vacuole 24.88 15.32
TraesCS6D01G294800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 27.7 14.57
TraesCS4D01G302600.1 Wheat plasma membrane 23.0 13.8
TraesCS7D01G178000.1 Wheat golgi 26.29 13.73
KRH38505 Soybean plasma membrane, vacuole 17.37 12.98
TraesCS4D01G200100.1 Wheat plastid 23.0 11.84
TraesCS7D01G420000.1 Wheat plastid 20.66 10.97
TraesCS1D01G453000.1 Wheat extracellular, plasma membrane 17.37 8.53
Protein Annotations
EnsemblPlants:TraesCS7D01G537300.1EnsemblPlantsGene:TraesCS7D01G537300Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDncoils:CoilPANTHER:PTHR14155PANTHER:PTHR14155:SF454PFAM:PF13639PFscan:PS50089
SEG:segSMART:SM00184SUPFAM:SSF57850TIGR:cd16454TMHMM:TMhelixMapMan:19.2.2.1.5.3.3
Description
No Description!
Coordinates
chr7D:-:628986948..628987589
Molecular Weight (calculated)
23296.1 Da
IEP (calculated)
5.536
GRAVY (calculated)
-0.099
Length
213 amino acids
Sequence
(BLAST)
001: MVVMGDHLIA VGRDVVISEP PMPTATSEDN STAKSTIISV VVCVMFLLLF FCGYMNRHCR HDHGGTATCR PAPEGGGASS GRGKSGLDQS VVATFPVMPW
101: RDLHKKKRAM VEAEDERCPV CLTAFEEGDS LRLLPHCSHV FHPECIDPWL QRRATCPLCW ANLERPLPAD AVAIAISAEG SDDDMHDGME ELAMELEMLR
201: AERRAARLLP AGT
Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Arabidopsis Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.