Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG26428 | Sorghum | plasma membrane | 88.4 | 84.48 |
| Os04t0450300-00 | Rice | endoplasmic reticulum, golgi | 68.81 | 78.76 |
| HORVU7Hr1G096980.1 | Barley | extracellular, vacuole | 37.11 | 69.57 |
| HORVU4Hr1G004070.1 | Barley | cytosol | 43.3 | 69.14 |
| HORVU5Hr1G086510.1 | Barley | mitochondrion | 15.46 | 68.18 |
| HORVU6Hr1G051510.1 | Barley | nucleus | 13.66 | 60.92 |
| HORVU1Hr1G001970.1 | Barley | mitochondrion | 13.92 | 60.0 |
| TraesCS7B01G475300.1 | Wheat | endoplasmic reticulum, plasma membrane | 24.48 | 49.48 |
| TraesCS7D01G537300.1 | Wheat | golgi, nucleus, plasma membrane | 26.03 | 47.42 |
| GSMUA_Achr8P09280_001 | Banana | cytosol | 5.67 | 45.83 |
| TraesCS7A01G551400.1 | Wheat | golgi, plastid | 27.84 | 44.26 |
| TraesCS7D01G538000.1 | Wheat | golgi | 28.61 | 43.36 |
| HORVU7Hr1G121570.1 | Barley | endoplasmic reticulum | 27.84 | 42.69 |
| Zm00001d005936_P001 | Maize | plasma membrane | 39.18 | 38.68 |
| Zm00001d020789_P001 | Maize | plasma membrane | 37.11 | 36.18 |
| Zm00001d031261_P001 | Maize | golgi | 31.7 | 32.63 |
| Zm00001d016901_P001 | Maize | vacuole | 28.35 | 31.7 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 34.02 | 31.35 |
| Zm00001d018122_P001 | Maize | vacuole | 31.96 | 29.59 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 31.19 | 29.16 |
| KRH38505 | Soybean | plasma membrane, vacuole | 21.13 | 28.77 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 25.26 | 27.07 |
| Zm00001d048230_P001 | Maize | golgi | 25.52 | 26.05 |
| Zm00001d030038_P001 | Maize | plastid | 15.46 | 25.86 |
| KRH13267 | Soybean | plasma membrane | 10.82 | 25.77 |
| Zm00001d026494_P001 | Maize | plastid | 13.14 | 25.12 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 24.23 | 24.54 |
| Zm00001d014612_P001 | Maize | peroxisome | 18.56 | 18.14 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 17.27 | 17.14 |
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 16.75 | 15.97 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | UniProt:A0A1D6E9I1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016874 | InterPro:IPR001841 | InterPro:IPR013083 | ProteinID:ONM17054.1 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF414 | SMART:SM00184 | SUPFAM:SSF57850 |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000220FC4B | EnsemblPlantsGene:Zm00001d003499 | EnsemblPlants:Zm00001d003499_P001 | EnsemblPlants:Zm00001d003499_T001 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
E3 ubiquitin-protein ligase ATL6
Coordinates
chr2:-:46118394..46119560
Molecular Weight (calculated)
40691.0 Da
IEP (calculated)
8.585
GRAVY (calculated)
-0.301
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: METRQLLLVF CLLGAGMAVV VDAQAQSAPA PPPRQTPSAP PQQTQFGRTM STFITVAISV FFFLLFVCAY INQCRLADPG AAAAAAAAAA AAGGGGGGPS
101: RRGKRGLDPA VVATFPIVSY REVVEHKIGK GVLECAVCLT AFEDDDDLRL LPHCSHAFHP ECIDPWLQSR VTCPLCRANL EKPAPAPAVA PPSPSPRLAP
201: RQPSPPPEAV AIPVSDDGSE GGSSSCEDDR KEEAVELETL RSARRAARMP RSHSTGHSLF AAAAAAAAAE EGDHERFTLR LPEHVREQVL RSRRLRHATS
301: LLNLSDMSSE GSSRGGRGVA GAGSFGNGGG SSHGGRRWQS FLARTVSWAR GGGDGSVRRG WDGSTRRGRD GGESSWKGVA SPPPTGRP
101: RRGKRGLDPA VVATFPIVSY REVVEHKIGK GVLECAVCLT AFEDDDDLRL LPHCSHAFHP ECIDPWLQSR VTCPLCRANL EKPAPAPAVA PPSPSPRLAP
201: RQPSPPPEAV AIPVSDDGSE GGSSSCEDDR KEEAVELETL RSARRAARMP RSHSTGHSLF AAAAAAAAAE EGDHERFTLR LPEHVREQVL RSRRLRHATS
301: LLNLSDMSSE GSSRGGRGVA GAGSFGNGGG SSHGGRRWQS FLARTVSWAR GGGDGSVRRG WDGSTRRGRD GGESSWKGVA SPPPTGRP
001: MMTRVECFNP HRWIILHVAI IIQSKANAQS FSPSPPDLQT GHTPSKTTVF AVLVTLFFLT GLLSVYIRHC ARSNPDSSTR YFRNRANDGS SRRGGLDNAV
101: VESFPVFAYS SVKESKIGSK DLECAICLNE LEDHETVRLL PICNHLFHID CIDTWLYSHA TCPVCRSNLT AKSNKPGDED DGVPLAAMRD HVVVDIETVE
201: VAKSHHRRLS SEISGKFPRS NSTGHSMDRF SDGTERFTLR LPDDVKMRLM AVKGRRLKRT RSFDVDLTAE HYCRSGEESS NTIGSGAKSG RVNWPDRWGL
301: TLFVSKSNSG SVRSQKSNGE PLK
101: VESFPVFAYS SVKESKIGSK DLECAICLNE LEDHETVRLL PICNHLFHID CIDTWLYSHA TCPVCRSNLT AKSNKPGDED DGVPLAAMRD HVVVDIETVE
201: VAKSHHRRLS SEISGKFPRS NSTGHSMDRF SDGTERFTLR LPDDVKMRLM AVKGRRLKRT RSFDVDLTAE HYCRSGEESS NTIGSGAKSG RVNWPDRWGL
301: TLFVSKSNSG SVRSQKSNGE PLK
Arabidopsis Description
ATL32RING-H2 finger protein ATL32 [Source:UniProtKB/Swiss-Prot;Acc:Q8W571]
SUBAcon: [mitochondrion,golgi,plastid,extracellular]
SUBAcon: [mitochondrion,golgi,plastid,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.