Factsheet for HORVU6Hr1G051510.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G007990.1	Barley	cytosol	51.72	50.56
HORVU5Hr1G086510.1	Barley	mitochondrion	43.68	43.18
HORVU1Hr1G001970.1	Barley	mitochondrion	41.38	40.0
GSMUA_Achr8P09280_001	Banana	cytosol	17.24	31.25
HORVU7Hr1G096980.1	Barley	extracellular, vacuole	54.02	22.71
HORVU4Hr1G004070.1	Barley	cytosol	54.02	19.34
HORVU7Hr1G121570.1	Barley	endoplasmic reticulum	45.98	15.81
Os04t0450300-00	Rice	endoplasmic reticulum, golgi	59.77	15.34
HORVU4Hr1G080840.1	Barley	cytosol	39.08	14.35
HORVU4Hr1G022090.1	Barley	endoplasmic reticulum, golgi, plasma membrane	33.33	13.68
Zm00001d003499_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	60.92	13.66
KXG26428	Sorghum	plasma membrane	58.62	12.56
HORVU5Hr1G106000.1	Barley	golgi	43.68	11.08
HORVU3Hr1G098880.1	Barley	plasma membrane	42.53	10.79
KRH13267	Soybean	plasma membrane	19.54	10.43
KRH38505	Soybean	plasma membrane, vacuole	33.33	10.18
HORVU5Hr1G069980.1	Barley	plasma membrane	44.83	10.16
HORVU4Hr1G078260.1	Barley	plasma membrane	37.93	9.24
HORVU6Hr1G077610.1	Barley	plasma membrane	42.53	9.11
HORVU6Hr1G022590.1	Barley	golgi, mitochondrion	41.38	8.91
HORVU7Hr1G098470.1	Barley	plastid	40.23	8.75
HORVU7Hr1G036380.2	Barley	endoplasmic reticulum	40.23	8.41
HORVU4Hr1G057610.1	Barley	plastid	36.78	7.77
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	32.18	7.11

Protein Annotations

EnsemblPlants:HORVU6Hr1G051510.1	EnsemblPlantsGene:HORVU6Hr1G051510	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF454	PFAM:PF13639	PFscan:PS50089	SEG:seg
SUPFAM:SSF57850	UniParc:UPI000B478B27	UniProt:A0A287U5G3	MapMan:19.2.2.1.5.3.3	:	:

Description

No Description!

Coordinates

chrchr6H:-:313608989..313609251

Molecular Weight (calculated)

9920.0 Da

IEP (calculated)

11.162

GRAVY (calculated)

-0.789

Length

87 amino acids

Sequence
(BLAST)

1: XXXAVCLTAF EEGDDLHLLP HCSHAFHPEC IDPWLEARIT CPLCRANLEK PPPPAVAPHR RSRWRGVSPR LRRRRRTSWR YRCGKRR

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.