Factsheet for HORVU3Hr1G098880.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G452500.1	Wheat	golgi, plasma membrane, vacuole	82.8	82.08
TraesCS3A01G459700.1	Wheat	vacuole	81.63	81.87
TraesCS3B01G499500.1	Wheat	vacuole	82.22	81.27
HORVU5Hr1G106000.1	Barley	golgi	74.93	74.93
Zm00001d016901_P001	Maize	vacuole	58.6	57.93
Os02t0572300-00	Rice	nucleus, plastid	62.97	51.67
HORVU3Hr1G007990.1	Barley	cytosol	12.24	47.19
HORVU6Hr1G051510.1	Barley	nucleus	10.79	42.53
GSMUA_Achr8P09280_001	Banana	cytosol	5.54	39.58
HORVU5Hr1G086510.1	Barley	mitochondrion	9.91	38.64
HORVU1Hr1G001970.1	Barley	mitochondrion	9.91	37.78
HORVU7Hr1G096980.1	Barley	extracellular, vacuole	19.53	32.37
HORVU4Hr1G080840.1	Barley	cytosol	20.99	30.38
HORVU4Hr1G004070.1	Barley	cytosol	20.7	29.22
HORVU5Hr1G069980.1	Barley	plasma membrane	32.65	29.17
HORVU4Hr1G022090.1	Barley	endoplasmic reticulum, golgi, plasma membrane	17.78	28.77
HORVU6Hr1G022590.1	Barley	golgi, mitochondrion	30.9	26.24
KRH38505	Soybean	plasma membrane, vacuole	21.28	25.61
HORVU6Hr1G077610.1	Barley	plasma membrane	29.45	24.88
HORVU4Hr1G078260.1	Barley	plasma membrane	25.07	24.09
KRH13267	Soybean	plasma membrane	11.37	23.93
HORVU7Hr1G121570.1	Barley	endoplasmic reticulum	16.91	22.92
HORVU4Hr1G057610.1	Barley	plastid	26.24	21.84
HORVU7Hr1G036380.2	Barley	endoplasmic reticulum	25.36	20.91
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	18.95	16.5
HORVU7Hr1G098470.1	Barley	plastid	17.78	15.25

Protein Annotations

EnsemblPlants:HORVU3Hr1G098880.1	EnsemblPlantsGene:HORVU3Hr1G098880	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF434
PFAM:PF13639	PFscan:PS50089	SEG:seg	SignalP:SignalP-TM	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI000B48616C	UniProt:A0A287MGR7	MapMan:19.2.2.1.5.3.3	:	:

Description

No Description!

Coordinates

chrchr3H:-:660184344..660185380

Molecular Weight (calculated)

36904.4 Da

IEP (calculated)

6.052

GRAVY (calculated)

-0.373

Length

343 amino acids

Sequence
(BLAST)

001: MAASRERSLP AVLLVLAAIA SRAAAQTPGG PGPSNSMSFS DVMTISFFMA IFFPVFVVLL AFACLRMFRP HDEPPASESS SSSARSRSRH KEGLDAAEIA
101: ALPLVSYRDV RQHRIGASRV DPLECAVCLL EFDDDDSLRL LPACPHAFHP ECIGLWLEKH VTCPLCRASV LDAPLPDPEE PTQPPSPEGT PAAPESPPLR
201: QTDHDTVVLI EDPGCNGEED DGTRDLARTR ALPQRSNSTG HERGGGTEHF ALRLPEHVRV EILMSHRLRH VTSAVASVRV REGSAHDPAA GGGSVRAAVA
301: RLLSLFAPGD GWRGGDDEEK SGGSSRRRRD ESARGAGEDK RND

Best Arabidopsis Sequence Match ( AT2G34990.2 )
(BLAST)

001: MVSFERNIRV LLQSVAYESS ETMVQPGTEI KASDLTLLVI TIILFAIFIV GLASVCFRWT SRQFYSQESI NPFTDSDVES RTSITAVRGL DEAIINSFPT
101: FLYSEVKERR IGIGGVECAV CICEFEDHET LRLMPECCHV FHADCVSVWL SDHSTCPLCR VDLCLQPGER SYLNPEPDLV ESTNSHLFDG VTWTNRNRPS
201: RSWSTRLSQC RVSQILISRS HSTGHSVVQP LDNLDRFTLR LPEEVRRQLT KKTVDNVAFS QARSSRRGYR SRSAGSERSV FSYQRRMHSF SDCAWSTSCG
301: GEAVAPSKDS RRISVEQSQL DDRV

Arabidopsis Description

RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34990]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.