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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • plastid 2
  • peroxisome 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:peroxisome
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G404600.1 Wheat plasma membrane 92.44 92.96
TraesCS4B01G304400.1 Wheat plasma membrane 92.44 92.96
TraesCS4D01G302600.1 Wheat plasma membrane 91.32 91.83
Os03t0188200-01 Rice golgi 68.63 69.41
EER92732 Sorghum golgi 64.15 62.23
Zm00001d027983_P001 Maize plasma membrane, plastid 59.66 58.84
Zm00001d048230_P001 Maize golgi 61.9 58.16
HORVU3Hr1G007990.1 Barley cytosol 12.04 48.31
HORVU6Hr1G051510.1 Barley nucleus 9.24 37.93
AT4G09100.1 Thale cress extracellular 13.45 36.36
CDX75097 Canola extracellular 12.61 32.61
HORVU4Hr1G022090.1 Barley endoplasmic reticulum, golgi, plasma membrane 19.33 32.55
GSMUA_Achr3P20400_001 Banana mitochondrion 30.25 31.4
Bra038386.1-P Field mustard extracellular 12.04 31.16
CDY48058 Canola extracellular 12.04 31.16
GSMUA_AchrUn_... Banana golgi, plasma membrane 29.97 30.31
CDY53236 Canola plasma membrane 29.41 30.26
Bra010641.1-P Field mustard extracellular, golgi 25.77 29.87
CDX90377 Canola extracellular, golgi 25.77 29.87
HORVU5Hr1G069980.1 Barley plasma membrane 31.93 29.69
HORVU5Hr1G086510.1 Barley mitochondrion 7.28 29.55
CDX82175 Canola extracellular 19.33 29.49
CDY39477 Canola extracellular 25.21 29.03
KRG92822 Soybean endoplasmic reticulum, plasma membrane, vacuole 26.89 28.57
KRG96857 Soybean vacuole 29.41 28.0
KRH68588 Soybean plasma membrane 28.57 27.87
KRH33975 Soybean golgi, plasma membrane, vacuole 28.01 27.86
HORVU1Hr1G001970.1 Barley mitochondrion 7.0 27.78
CDY18787 Canola plasma membrane 29.97 27.65
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 23.53 27.63
CDX86162 Canola endoplasmic reticulum, plasma membrane, vacuole 23.53 27.63
HORVU6Hr1G022590.1 Barley golgi, mitochondrion 31.09 27.48
Bra040642.1-P Field mustard plasma membrane 29.41 27.2
AT5G27420.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 28.01 27.17
CDY19719 Canola endoplasmic reticulum, plasma membrane, vacuole 26.61 27.14
CDY25038 Canola plasma membrane 28.01 27.03
CDX99986 Canola plasma membrane 26.33 26.93
Bra036631.1-P Field mustard plasma membrane 26.33 26.86
AT3G05200.1 Thale cress plasma membrane 29.69 26.63
CDY05577 Canola plasma membrane 28.29 26.44
CDX86163 Canola plasma membrane 22.13 26.33
AT4G40070.1 Thale cress extracellular, golgi, mitochondrion, plastid 23.81 26.32
KRH72413 Soybean cytosol, golgi, vacuole 27.45 26.2
HORVU7Hr1G096980.1 Barley extracellular, vacuole 15.13 26.09
CDX80653 Canola plasma membrane 22.13 26.07
Bra009962.1-P Field mustard mitochondrion, plastid 20.73 25.87
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 27.73 25.65
Solyc03g112340.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 28.57 25.63
Bra020591.1-P Field mustard plasma membrane 27.17 25.46
KRH52998 Soybean endoplasmic reticulum, extracellular, plasma membrane 23.81 25.45
PGSC0003DMT400046825 Potato endoplasmic reticulum, plasma membrane, vacuole 28.29 25.38
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 25.49 25.35
CDY31657 Canola extracellular, plasma membrane, plastid 26.05 25.27
CDX82176 Canola extracellular 25.77 25.21
CDY70284 Canola plasma membrane 27.45 25.19
AT2G35000.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 26.61 25.13
HORVU3Hr1G098880.1 Barley plasma membrane 24.09 25.07
KRH62285 Soybean endoplasmic reticulum, plasma membrane, vacuole 23.81 25.0
HORVU4Hr1G080840.1 Barley cytosol 16.53 24.89
KRH16796 Soybean cytosol, endoplasmic reticulum, plasma membrane, plastid 26.33 24.8
AT1G72200.1 Thale cress plasma membrane 28.01 24.75
CDX84269 Canola endoplasmic reticulum, plasma membrane, plastid 25.49 24.73
Bra005375.1-P Field mustard cytosol, nucleus, plastid 21.57 24.6
CDY31656 Canola cytosol, endoplasmic reticulum, plastid 21.57 24.6
Bra040855.1-P Field mustard golgi, plasma membrane 25.77 24.47
CDY21367 Canola golgi, plasma membrane 25.77 24.47
Bra012330.1-P Field mustard golgi, plasma membrane 23.53 24.42
HORVU4Hr1G004070.1 Barley cytosol 16.53 24.28
PGSC0003DMT400073575 Potato extracellular, plasma membrane 29.41 24.25
CDY62007 Canola golgi, plasma membrane 25.49 24.2
HORVU5Hr1G106000.1 Barley golgi 23.25 24.2
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 24.93 24.18
HORVU6Hr1G077610.1 Barley plasma membrane 27.45 24.14
HORVU4Hr1G057610.1 Barley plastid 27.73 24.03
CDY05049 Canola plasma membrane 19.61 23.97
CDX84270 Canola cytosol, plastid, vacuole 21.01 23.96
Bra008016.1-P Field mustard plasma membrane 26.89 23.82
CDY03651 Canola plasma membrane 26.89 23.82
CDX82179 Canola plasma membrane 23.25 23.65
AT1G22500.1 Thale cress plasma membrane 24.93 23.36
AT4G09120.1 Thale cress plasma membrane 22.41 23.19
AT4G09110.1 Thale cress endoplasmic reticulum, extracellular, golgi 19.61 23.18
VIT_18s0001g06670.t01 Wine grape extracellular, plasma membrane, vacuole 25.77 23.12
AT2G34990.2 Thale cress plasma membrane 20.73 22.84
VIT_14s0128g00120.t01 Wine grape plasma membrane, plastid, vacuole 26.61 22.62
Solyc12g087860.1.1 Tomato vacuole 23.53 22.52
PGSC0003DMT400045807 Potato plasma membrane 23.81 22.49
Bra008015.1-P Field mustard plasma membrane 24.93 22.47
CDY03652 Canola plasma membrane 24.93 22.47
AT4G09130.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 22.13 22.13
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 21.01 22.12
CDX90713 Canola extracellular, golgi, plasma membrane 21.01 22.12
Solyc04g074820.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 24.09 21.88
PGSC0003DMT400005472 Potato endoplasmic reticulum, plasma membrane, vacuole 23.81 21.74
HORVU7Hr1G036380.2 Barley endoplasmic reticulum 24.93 21.39
AT1G35330.1 Thale cress endoplasmic reticulum 19.61 21.34
KRH72412 Soybean nucleus, plasma membrane, plastid 22.41 20.73
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 20.17 20.69
KRH16794 Soybean plasma membrane 22.69 20.66
CDY12022 Canola plasma membrane 20.17 20.4
Bra028075.1-P Field mustard plasma membrane 19.61 19.83
CDY03116 Canola plasma membrane 19.33 19.55
HORVU7Hr1G121570.1 Barley endoplasmic reticulum 13.73 19.37
CDY70750 Canola extracellular, mitochondrion, nucleus 15.69 18.48
CDY27787 Canola extracellular, plasma membrane, vacuole 14.01 16.61
CDY05145 Canola plasma membrane 13.73 16.5
CDY12527 Canola extracellular, plasma membrane, vacuole 10.92 16.39
CDY25739 Canola endoplasmic reticulum, extracellular, plasma membrane 10.64 15.97
HORVU1Hr1G095220.1 Barley golgi, plasma membrane 17.09 15.48
HORVU7Hr1G098470.1 Barley plastid 17.09 15.25
CDY50446 Canola mitochondrion 8.4 12.55
Protein Annotations
MapMan:19.2.2.1.5.3.3Gene3D:3.30.40.10GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538
EnsemblPlantsGene:HORVU4Hr1G078260EnsemblPlants:HORVU4Hr1G078260.1InterPro:IPR001841InterPro:IPR013083UniProt:M0UTN7PFAM:PF13639
PFscan:PS50089PANTHER:PTHR14155PANTHER:PTHR14155:SF298SMART:SM00184SUPFAM:SSF57850SignalP:SignalP-TM
TMHMM:TMhelixUniParc:UPI000295AE99InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:seg:
Description
No Description!
Coordinates
chrchr4H:-:606838358..606840127
Molecular Weight (calculated)
38553.4 Da
IEP (calculated)
6.433
GRAVY (calculated)
-0.310
Length
357 amino acids
Sequence
(BLAST)
001: MARGQITRLL LLLLLSSTAL PSLAQQTSNS TGHAGSSRTA GGFSPTTVVV LVVLIAAFVA LTLFSIYINR CTGAHPVPRR PSRATAPNQP VDAAAQSDRC
101: RPRGLDREVV EAFPTAVYGD VKARMAATKS GPLECAVCLT EFEDNDELRV LPACCHVFHP DCIDPWLAGA VTCPLCRADL NAPPAIPAAA ESRGDLTDTA
201: VQEEPEELDE ECSVVSFTAE SLTSFSTIWR HEFTGAEYNH YRRTQSAMDA PDRHTLRLPE HVMKELAAVR RHRRAASLAA EYPDTADQRT PGWLTSFLRR
301: SMSWQRQSRG GSDAVEEHGG SKRVHPVAGA PVEKPSGSGS GGDEKKESSD VDALNRV
Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Arabidopsis Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.