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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • nucleus 2
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 5
  • golgi 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G72200.1 Bra002403.1-P AT5G22290.1 21798944
AT1G72200.1 Bra006619.1-P AT5G22290.1 21798944
AT1G72200.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra008016.1-P Field mustard plasma membrane 85.24 75.93
AT1G72200.1 Thale cress plasma membrane 76.88 68.32
Bra008015.1-P Field mustard plasma membrane 72.14 65.4
Bra040855.1-P Field mustard golgi, plasma membrane 67.13 64.1
CDX82175 Canola extracellular 37.88 58.12
Bra012330.1-P Field mustard golgi, plasma membrane 54.6 56.98
KRH72413 Soybean cytosol, golgi, vacuole 38.44 36.9
Bra038386.1-P Field mustard extracellular 13.93 36.23
KRH52998 Soybean endoplasmic reticulum, extracellular, plasma membrane 33.7 36.23
KRH62285 Soybean endoplasmic reticulum, plasma membrane, vacuole 34.26 36.18
KRH16796 Soybean cytosol, endoplasmic reticulum, plasma membrane, plastid 37.6 35.62
VIT_18s0001g06670.t01 Wine grape extracellular, plasma membrane, vacuole 37.6 33.92
Bra011991.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 12.53 31.69
GSMUA_Achr7P12810_001 Banana endoplasmic reticulum, plasma membrane, vacuole 26.74 31.48
PGSC0003DMT400005472 Potato endoplasmic reticulum, plasma membrane, vacuole 34.26 31.46
Bra010641.1-P Field mustard extracellular, golgi 26.74 31.17
Bra036631.1-P Field mustard plasma membrane 30.36 31.14
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 25.91 30.59
Solyc04g074820.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 33.15 30.28
Bra009962.1-P Field mustard mitochondrion, plastid 23.68 29.72
Solyc12g087860.1.1 Tomato vacuole 30.64 29.49
GSMUA_AchrUn_... Banana golgi, plasma membrane 28.97 29.46
PGSC0003DMT400045807 Potato plasma membrane 30.92 29.37
HORVU4Hr1G022090.1 Barley endoplasmic reticulum, golgi, plasma membrane 17.27 29.25
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 29.8 29.08
Bra005375.1-P Field mustard cytosol, nucleus, plastid 25.35 29.07
Bra040642.1-P Field mustard plasma membrane 31.2 29.02
GSMUA_Achr3P20400_001 Banana mitochondrion 27.58 28.78
GSMUA_Achr5P17910_001 Banana golgi, plasma membrane, vacuole 27.58 28.7
Zm00001d005936_P001 Maize plasma membrane 31.2 28.5
GSMUA_Achr3P06680_001 Banana mitochondrion, plastid 30.64 28.35
Bra020591.1-P Field mustard plasma membrane 30.08 28.35
KRH72412 Soybean nucleus, plasma membrane, plastid 30.36 28.24
Os09t0468300-00 Rice golgi, plasma membrane 30.36 28.17
TraesCS5D01G254900.1 Wheat golgi, plasma membrane 30.64 28.06
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 26.46 28.02
HORVU5Hr1G069980.1 Barley plasma membrane 29.8 27.86
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 29.8 27.72
GSMUA_Achr9P15010_001 Banana endoplasmic reticulum, plasma membrane 27.58 27.65
KRH16794 Soybean plasma membrane 30.08 27.55
TraesCS5B01G245800.1 Wheat plasma membrane 30.36 27.53
TraesCS5A01G248100.1 Wheat plasma membrane 30.36 27.46
GSMUA_Achr6P30500_001 Banana plasma membrane 22.28 27.4
GSMUA_Achr10P... Banana plasma membrane 29.53 27.32
Zm00001d020789_P001 Maize plasma membrane 30.08 27.14
EER99041 Sorghum endoplasmic reticulum, plasma membrane 30.92 26.94
Zm00001d031261_P001 Maize golgi 28.13 26.79
GSMUA_AchrUn_... Banana plastid 26.74 26.67
HORVU4Hr1G080840.1 Barley cytosol 17.55 26.58
TraesCS6B01G151000.1 Wheat extracellular, golgi, plasma membrane 29.53 26.24
TraesCS3D01G495500.1 Wheat vacuole 28.13 26.17
EES18560 Sorghum golgi, plasma membrane 28.41 25.95
TraesCS6D01G113000.1 Wheat golgi 28.97 25.94
TraesCS6A01G122800.1 Wheat endoplasmic reticulum, golgi, mitochondrion 28.97 25.62
Bra028075.1-P Field mustard plasma membrane 25.07 25.5
HORVU4Hr1G078260.1 Barley plasma membrane 25.35 25.49
TraesCS3B01G549900.1 Wheat vacuole 22.01 25.08
EER92732 Sorghum golgi 25.63 25.0
Os08t0484200-01 Rice golgi 28.69 24.94
TraesCS4A01G404600.1 Wheat plasma membrane 24.51 24.79
TraesCS4D01G302600.1 Wheat plasma membrane 24.51 24.79
HORVU6Hr1G022590.1 Barley golgi, mitochondrion 27.86 24.75
Zm00001d027983_P001 Maize plasma membrane, plastid 24.79 24.59
TraesCS4B01G304400.1 Wheat plasma membrane 24.23 24.51
Bra013268.1-P Field mustard plasma membrane 20.06 24.49
Os03t0188200-01 Rice golgi 23.96 24.36
Zm00001d052189_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 28.13 24.34
Zm00001d048230_P001 Maize golgi 25.35 23.95
Zm00001d018122_P001 Maize vacuole 27.86 23.87
Zm00001d037192_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 27.86 23.75
OQU85775 Sorghum golgi, plasma membrane, vacuole 27.86 23.64
TraesCS6B01G346000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 26.46 23.63
KXG39223 Sorghum golgi, plasma membrane, plastid, vacuole 25.35 23.51
Bra017535.1-P Field mustard nucleus, plasma membrane, plastid 18.38 23.49
TraesCS6D01G294800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 26.46 23.46
Os02t0759400-01 Rice endoplasmic reticulum, golgi, mitochondrion, plastid 28.41 23.34
TraesCS6A01G315600.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 26.18 23.21
HORVU6Hr1G077610.1 Barley plasma membrane 26.18 23.15
Os06t0218300-01 Rice endoplasmic reticulum, extracellular, golgi 28.41 23.08
TraesCS7D01G178000.1 Wheat golgi 26.18 23.04
TraesCS4A01G104900.1 Wheat mitochondrion 24.79 23.0
TraesCS7B01G081700.1 Wheat golgi 26.46 22.95
TraesCS7A01G176700.1 Wheat golgi 26.18 22.65
Bra025008.1-P Field mustard plastid 18.11 22.65
Zm00001d029395_P001 Maize plasma membrane, plastid 23.96 22.45
Os03t0391100-00 Rice endoplasmic reticulum, golgi 26.46 21.84
HORVU4Hr1G057610.1 Barley plastid 24.79 21.6
TraesCS4D01G200100.1 Wheat plastid 24.23 21.01
TraesCS4B01G199100.1 Wheat plastid 24.51 19.69
OQU76061 Sorghum cytosol, peroxisome, plasma membrane 29.25 19.27
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 18.66 19.25
HORVU7Hr1G036380.2 Barley endoplasmic reticulum 22.28 19.23
Bra010349.1-P Field mustard endoplasmic reticulum, plasma membrane 20.33 17.38
Bra011068.1-P Field mustard endoplasmic reticulum, plasma membrane 20.06 17.27
Bra005343.1-P Field mustard plastid 13.37 17.2
Bra024178.1-P Field mustard endoplasmic reticulum, plasma membrane 20.06 17.14
Bra009136.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 18.94 16.83
Bra017320.1-P Field mustard extracellular, nucleus, plasma membrane 14.21 15.18
Bra012630.1-P Field mustard nucleus 19.78 11.47
Protein Annotations
EnsemblPlants:Bra003887.1EnsemblPlants:Bra003887.1-PEnsemblPlantsGene:Bra003887Gene3D:3.30.40.10GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155
PANTHER:PTHR14155:SF414PFAM:PF13639PFscan:PS50089SMART:SM00184SUPFAM:SSF57850TMHMM:TMhelix
UniParc:UPI000254180EUniProt:M4CI54MapMan:19.2.2.1.5.3.3:::
Description
AT1G72200 (E=2e-153) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA07:+:15572997..15574076
Molecular Weight (calculated)
39593.0 Da
IEP (calculated)
7.875
GRAVY (calculated)
-0.330
Length
359 amino acids
Sequence
(BLAST)
001: MYGESSRFDP TMAILMIVLV SVFFALGFFS IYIRRCLERC MGSNNHPLDV GGNWLSLSRP QARGLDASVV ETFPTFRYST VKTLKIGKEA LECPVCLNEF
101: EDDETLRLLP KCCHVFHPGC VDAWLRSHAT CPLCRADLVP VPGESVVSVQ IPGLADNAPG SDLTGNRTMV LSSPDVRLID SVALTGNQSR PRRSLSTGWN
201: LAGIFTNSDS PGQHAENLDR FTLRLPENIH NKLVNPSLSK SHVELPQVMS SARGYRTGGL ETDRNYFYYE RFDDQDGRLD RRPFSITPPY RTCSINTSPC
301: GSGDQVRAAT PKGGLLLAMK SPFDRLFTGK NKNIGERSSS NNIGERSSDH LRSGDASPV
Best Arabidopsis Sequence Match ( AT1G72200.1 )
(BLAST)
001: MNPKGRTNLN RSIIGGHDHG SILQLLLFLL LLSSHGGFKF VAGQATHGGS DVSGDSSRFD PTMAILMIVL VSVFFFLGFF SVYIRRCLER VMGMDYGNPN
101: DAGNWLATNR QQARGLDASI IETFPTFQYS TVKTLRIGKE ALECSVCLNE FEDDETLRLI PKCCHVFHPG CIDAWLRSHT TCPLCRADLI PVPGESIVSI
201: QIPGLVNDPP GSDPNGDRIR SLGSPDARLI ESVALTCNQS MPRRSMSTGW NLAGMFTNSD RTGQHSENLD RFTLRLPQDI HNKLVNPNLS KVHVALPQVM
301: SSTRGYRTGS LGSERNYFYY ERFDQDGRLD RRPFSITPPY RTSSINHMSP GGSGGDKVRA SSPKSLLLAM RSPFDRLFLG KNNNVGENSS DHLRSCDATP
401: SNTV
Arabidopsis Description
ATL11RING-H2 finger protein ATL11 [Source:UniProtKB/Swiss-Prot;Acc:Q84W40]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.