Factsheet for Bra011991.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04519	Canola	endoplasmic reticulum, extracellular, plasma membrane	97.18	97.18
AT2G27940.1	Thale cress	plasma membrane	71.83	43.04
PGSC0003DMT400001221	Potato	vacuole	40.85	31.02
Solyc11g066510.1.1	Tomato	nucleus	40.14	24.15
Bra038386.1-P	Field mustard	extracellular	23.24	23.91
Bra010641.1-P	Field mustard	extracellular, golgi	33.1	15.26
Bra005343.1-P	Field mustard	plastid	27.46	13.98
Bra009960.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	29.58	13.82
Bra009962.1-P	Field mustard	mitochondrion, plastid	27.46	13.64
Bra036631.1-P	Field mustard	plasma membrane	31.69	12.86
Bra003887.1-P	Field mustard	endoplasmic reticulum, plasma membrane	31.69	12.53
Bra020591.1-P	Field mustard	plasma membrane	32.39	12.07
Bra012330.1-P	Field mustard	golgi, plasma membrane	28.87	11.92
Bra005375.1-P	Field mustard	cytosol, nucleus, plastid	26.06	11.82
Bra039454.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	31.69	11.66
Bra005374.1-P	Field mustard	plasma membrane, plastid, vacuole	29.58	11.41
Bra017320.1-P	Field mustard	extracellular, nucleus, plasma membrane	26.76	11.31
Bra008015.1-P	Field mustard	plasma membrane	30.99	11.11
Bra017535.1-P	Field mustard	nucleus, plasma membrane, plastid	21.83	11.03
Bra008016.1-P	Field mustard	plasma membrane	30.99	10.92
Bra040642.1-P	Field mustard	plasma membrane	29.58	10.88
Bra025008.1-P	Field mustard	plastid	21.83	10.8
Bra013268.1-P	Field mustard	plasma membrane	21.83	10.54
Bra040855.1-P	Field mustard	golgi, plasma membrane	27.46	10.37
Bra000673.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	23.24	9.73
Bra028075.1-P	Field mustard	plasma membrane	23.94	9.63
Bra009136.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	26.76	9.41
Bra011068.1-P	Field mustard	endoplasmic reticulum, plasma membrane	27.46	9.35
Bra024178.1-P	Field mustard	endoplasmic reticulum, plasma membrane	27.46	9.29
Bra010349.1-P	Field mustard	endoplasmic reticulum, plasma membrane	27.46	9.29
Bra001139.1-P	Field mustard	extracellular, golgi, plasma membrane	17.61	7.18
Bra012630.1-P	Field mustard	nucleus	21.13	4.85

Protein Annotations

EnsemblPlants:Bra011991.1	EnsemblPlants:Bra011991.1-P	EnsemblPlantsGene:Bra011991	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF274	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000254193D	UniProt:M4D683
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

AT2G27940 (E=4e-034) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA07:+:10710578..10711006

Molecular Weight (calculated)

16206.3 Da

IEP (calculated)

7.136

GRAVY (calculated)

-0.035

Length

142 amino acids

Sequence
(BLAST)

001: MALTIFVFLA ALFFMAFFSV FIRHFAEDES TADISFSRPT TRRSYSPPRR HFNLPRGLDS EAVRSLPVYR YSKSAKHWIE DCIICLSKFE EGETVKVIPH
101: CGHLFHVDCV DTWLNSHVTC PLCRSSQVLP DQGSAESSCK EV

Best Arabidopsis Sequence Match ( AT2G27940.1 )
(BLAST)

001: METKHLRKLL QLYQACGGEQ ELTKTVQNVT SSPLTPTPPP QPPSALDSTM ALTIFILLVA LFFMGFFSVY FRHFADSSSS TVDISSMPRT RSSRMSPRRL
101: STSVVVSRPY SFRRGLDSQA VRSLPVYRYT KAAKQRNEDC VICLSDFEEG ETVKVIPHCG HVFHVDCVDT WLSSYVTCPL CRSNQLFSDK DLGMQEPPDQ
201: DSAEEHDTCD GVDTCVRRCS SCSSLGQRTG LERSLSL

Arabidopsis Description

ATL57RING-H2 finger protein ATL57 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.