Factsheet for Bra012630.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90435	Canola	nucleus	98.71	99.51
CDY01502	Canola	plasma membrane	46.2	96.3
AT4G17920.1	Thale cress	plasma membrane	37.8	80.97
Bra013268.1-P	Field mustard	plasma membrane	37.96	79.93
Bra025008.1-P	Field mustard	plastid	25.69	55.4
Bra017535.1-P	Field mustard	nucleus, plasma membrane, plastid	24.56	54.09
Solyc08g005110.1.1	Tomato	plastid	18.26	41.24
KRH74402	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	18.09	38.89
KRH75596	Soybean	endoplasmic reticulum, plasma membrane, plastid	17.93	36.04
KRH45424	Soybean	endoplasmic reticulum, plasma membrane	17.29	34.63
Solyc08g076800.2.1	Tomato	plastid	15.51	33.92
Bra038386.1-P	Field mustard	extracellular	6.79	30.43
Bra009960.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	11.95	24.34
Bra010641.1-P	Field mustard	extracellular, golgi	11.79	23.7
Bra005375.1-P	Field mustard	cytosol, nucleus, plastid	11.47	22.68
Bra009962.1-P	Field mustard	mitochondrion, plastid	10.34	22.38
Bra036631.1-P	Field mustard	plasma membrane	12.28	21.71
Bra040642.1-P	Field mustard	plasma membrane	13.25	21.24
Bra011991.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	4.85	21.13
Bra005343.1-P	Field mustard	plastid	9.37	20.79
Bra020591.1-P	Field mustard	plasma membrane	12.44	20.21
Bra039454.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	12.6	20.21
Bra003887.1-P	Field mustard	endoplasmic reticulum, plasma membrane	11.47	19.78
Bra000673.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	10.5	19.17
Bra005374.1-P	Field mustard	plasma membrane, plastid, vacuole	11.31	19.02
Bra012330.1-P	Field mustard	golgi, plasma membrane	10.02	18.02
Bra028075.1-P	Field mustard	plasma membrane	10.18	17.85
Bra040855.1-P	Field mustard	golgi, plasma membrane	10.82	17.82
Bra008016.1-P	Field mustard	plasma membrane	11.31	17.37
Bra008015.1-P	Field mustard	plasma membrane	10.99	17.17
Bra017320.1-P	Field mustard	extracellular, nucleus, plasma membrane	9.05	16.67
Bra001139.1-P	Field mustard	extracellular, golgi, plasma membrane	7.59	13.51
Bra009136.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	8.56	13.12
Bra011068.1-P	Field mustard	endoplasmic reticulum, plasma membrane	8.56	12.71
Bra024178.1-P	Field mustard	endoplasmic reticulum, plasma membrane	8.56	12.62
Bra010349.1-P	Field mustard	endoplasmic reticulum, plasma membrane	8.56	12.62

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.1330.80	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra012630	EnsemblPlants:Bra012630.1	EnsemblPlants:Bra012630.1-P
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001841	InterPro:IPR005175	InterPro:IPR013083
UniProt:M4D820	PFAM:PF03479	PFAM:PF13639	InterPro:PPC_dom	PFscan:PS50089	PFscan:PS51742
PANTHER:PTHR14155	PANTHER:PTHR14155:SF305	SMART:SM00184	SUPFAM:SSF117856	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI0002540A0D	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT4G17920 (E=5e-114) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:-:23055892..23059026

Molecular Weight (calculated)

67456.3 Da

IEP (calculated)

5.885

GRAVY (calculated)

-0.361

Length

619 amino acids

Sequence
(BLAST)

001: MEDSKEPNQQ QQLQPPHGTL TGSYNRNAAA LTGPTSTSQA MHQWLSVGDL SQRQPQQPLR LDGSMQFGNE QLGRGRLRKY ASDVIDLSLR LGCGGGASAN
101: SSDPPPVKRT RRRPPGPVKT QLNALGGAGT PFISDIIEVE AGEDIAAKIV AYTHQAGPRE VVIISASGAV SSALLNSPSG VFKFEGQYEI VAMSGSFLNT
201: ESNGTVTITG DLSVSLANQN GKIVGGFVAG MLVAASLVQV GVGSFVPERV VENNPEAASA SATASGGGLN DSKSPLHQVG NSTPQPPDQM CDLRLWPGSN
301: PHSIVFLVYE KSHGGDNPSP TAIMPTIPSP LPPQEHYVTP PLTVIFTVVF LIFIFVGFFT LYFCKCILDT IMQAWHIHHS GETEATDNPL QPPEAPLVNP
401: GLDLRIINSF PTFPYFSVKD LREEKYGLEC AICLLEFDED HVLRLLTTCY HVFHQECIDL WFESHKTCPV CRHDLDPPPP PENTSNVLSN VDEMIINVIQ
501: ETSYDDGDQH HHHQTTTPID TGTSSGQSSC VNNEISRKEQ TLPETFSRSH STGHSIVRNK PEEEDKYTLR LPEHVKIKVT RGHSQTKSCV TFAELARRSY
601: DHRRFGEVSN QTVATHSGE

Best Arabidopsis Sequence Match ( AT4G17920.1 )
(BLAST)

001: MSTIIPSPLA PQPPQQHYVT PPLTVILTVI LLVFFFIGFF TLYFCKCFLD TMVQAWRLHH GGDTVSDNPL QQPEAPPVNP GLELRIINSF PTFPYSSVKD
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHRTCPV CRRDLDPPPP PENTKPTVDE MIIDVIQETS DDEEDDHHRQ QTTTQIDTWP
201: SSGQTSSIKK EQNLPEKFSR SHSTGHSIVR NKPEEEDKYT LRLPEHVKIK VTRGHSQTES CVTFAELIRN RGYDHRRFGE VSGQTQSKN

Arabidopsis Description

ATL29RING-H2 finger protein ATL29 [Source:UniProtKB/Swiss-Prot;Acc:O49691]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.