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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular, nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, nucleus, plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:extracellular
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY62419 Canola cytosol 44.35 99.33
Bra005343.1-P Field mustard plastid 61.9 74.55
AT2G35420.1 Thale cress plasma membrane, plastid 52.98 70.08
TraesCS1A01G192600.1 Wheat plastid 18.45 29.38
Os10t0574400-01 Rice mitochondrion, plasma membrane, plastid 17.26 29.15
Bra011991.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 11.31 26.76
Zm00001d030038_P001 Maize plastid 18.45 26.72
OQU92087 Sorghum golgi, peroxisome, plastid 19.64 26.51
KRH53320 Soybean mitochondrion 8.33 26.42
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 13.1 26.19
GSMUA_Achr4P12270_001 Banana plastid 13.39 26.01
Bra038386.1-P Field mustard extracellular 9.82 23.91
Bra017535.1-P Field mustard nucleus, plasma membrane, plastid 15.77 18.86
Bra025008.1-P Field mustard plastid 15.48 18.12
Bra013268.1-P Field mustard plasma membrane 15.48 17.69
KRH14610 Soybean endoplasmic reticulum, nucleus, plastid 9.23 17.61
Bra010641.1-P Field mustard extracellular, golgi 16.07 17.53
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 16.37 16.22
KRH31340 Soybean endoplasmic reticulum, plasma membrane 10.42 15.56
Bra005375.1-P Field mustard cytosol, nucleus, plastid 14.29 15.34
Bra036631.1-P Field mustard plasma membrane 15.77 15.14
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 13.69 15.13
Bra040642.1-P Field mustard plasma membrane 16.96 14.77
Bra009962.1-P Field mustard mitochondrion, plastid 12.5 14.69
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 15.18 14.21
Bra020591.1-P Field mustard plasma membrane 16.07 14.17
Bra008015.1-P Field mustard plasma membrane 16.67 14.14
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 15.48 14.13
Bra012330.1-P Field mustard golgi, plasma membrane 14.29 13.95
Bra040855.1-P Field mustard golgi, plasma membrane 15.48 13.83
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 15.77 13.73
Bra008016.1-P Field mustard plasma membrane 16.37 13.65
Bra028075.1-P Field mustard plasma membrane 14.29 13.6
Bra010349.1-P Field mustard endoplasmic reticulum, plasma membrane 14.29 11.43
Bra011068.1-P Field mustard endoplasmic reticulum, plasma membrane 13.69 11.03
Bra024178.1-P Field mustard endoplasmic reticulum, plasma membrane 12.8 10.24
Bra009136.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 11.9 9.9
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 9.52 9.2
Bra012630.1-P Field mustard nucleus 16.67 9.05
Protein Annotations
EnsemblPlants:Bra017320.1EnsemblPlants:Bra017320.1-PEnsemblPlantsGene:Bra017320Gene3D:3.30.40.10GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155
PANTHER:PTHR14155:SF305PFAM:PF13639PFscan:PS50089SMART:SM00184SUPFAM:SSF57850TMHMM:TMhelix
UniParc:UPI0002543C7AUniProt:M4DLD9MapMan:19.2.2.1.5.3.3:::
Description
AT2G35420 (E=7e-090) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA04:-:15385876..15386886
Molecular Weight (calculated)
38040.1 Da
IEP (calculated)
8.268
GRAVY (calculated)
-0.340
Length
336 amino acids
Sequence
(BLAST)
001: MASTTTTIPD PDVFPTITMP ITVILTGSLL FIIIAGFFVL FFWRCLLNRL SSAWTLQRTP YGDLIHVNTP PENTGLDPFI IKSFPVILYS SATMRNQCTE
101: CAICLAEFSD EDTVRLITVC RHGFHSTCID SWFESHKTCP VCRCELDPGV VGSGSHESLH NTVTITIQDL NYEEVNPPST SSSKRFPEAV SAWPFSRSHS
201: TGRFMVKTKR EHYQFKENYP TTSSSKRLME ASAWRFSRSH STGHFMVKTM DKTKGKHYQT GSSVMFEENN PTTSPSKRLM EASAWRFSRS YSTGQFMGKT
301: RDVTMKIKGR HYQTGSCASF DELTRYDEAT GYGMAW
Best Arabidopsis Sequence Match ( AT2G35420.1 )
(BLAST)
001: MSSTTSIDSI PATAVFPSVS MPVTVVLTGV LLFVIFAGFF SLFLWQFLLN RLFTTWNLQR TPYGDLIHVA TPPENTGLDP FIIRSFPVFH YSSATKKNHG
101: TECAICLSEF SDEDTVRLIT VCRHPFHSNC IDLWFELHKT CPVCRCELDP GMIGSGRLES FHNTVTITIQ DINHDEENPP TAGSSKRLIE ASAWRFSRSH
201: STGHFMVKTT DANVKSKRRH YQTGSCVSFD ELTRYEGAGW QWLGDSSHIS RIEV
Arabidopsis Description
ATL28RING-H2 finger protein ATL28 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKR1]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.