Factsheet for Zm00001d030038_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92087	Sorghum	golgi, peroxisome, plastid	87.07	81.12
TraesCS1A01G192600.1	Wheat	plastid	53.02	58.29
Os10t0574400-01	Rice	mitochondrion, plasma membrane, plastid	49.14	57.29
GSMUA_Achr4P12270_001	Banana	plastid	27.59	36.99
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	26.72	36.9
AT2G35420.1	Thale cress	plasma membrane, plastid	27.59	25.2
CDY62419	Canola	cytosol	15.95	24.67
Zm00001d026494_P001	Maize	plastid	20.69	23.65
KRH53320	Soybean	mitochondrion	10.78	23.58
Bra005343.1-P	Field mustard	plastid	27.59	22.94
PGSC0003DMT400001221	Potato	vacuole	17.24	21.39
Solyc11g066510.1.1	Tomato	nucleus	19.4	19.07
Bra017320.1-P	Field mustard	extracellular, nucleus, plasma membrane	26.72	18.45
KRH14610	Soybean	endoplasmic reticulum, nucleus, plastid	12.93	17.05
Zm00001d016901_P001	Maize	vacuole	25.0	16.71
Zm00001d031261_P001	Maize	golgi	26.72	16.45
Zm00001d005936_P001	Maize	plasma membrane	27.16	16.03
KRH31340	Soybean	endoplasmic reticulum, plasma membrane	15.09	15.56
Zm00001d003499_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	25.86	15.46
Zm00001d020789_P001	Maize	plasma membrane	25.43	14.82
Zm00001d027983_P001	Maize	plasma membrane, plastid	22.84	14.64
Zm00001d029395_P001	Maize	plasma membrane, plastid	24.14	14.62
Zm00001d037192_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	26.29	14.49
Zm00001d048230_P001	Maize	golgi	22.84	13.95
Zm00001d052189_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	23.28	13.01
Zm00001d018122_P001	Maize	vacuole	22.41	12.41
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	19.83	11.76
Zm00001d014612_P001	Maize	peroxisome	19.4	11.34
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	17.24	9.83

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	UniProt:A0A1D6K990	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM00071.1
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF305	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI000182B67C	EnsemblPlantsGene:Zm00001d030038	EnsemblPlants:Zm00001d030038_P001	EnsemblPlants:Zm00001d030038_T001	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase ATL6

Coordinates

chr1:-:101381149..101382079

Molecular Weight (calculated)

24742.4 Da

IEP (calculated)

7.603

GRAVY (calculated)

-0.024

Length

232 amino acids

Sequence
(BLAST)

001: MDTVVVTAAR RLLGNATHDH RAHHGGAASS PRPGAASAPV RPPPREPFPM LLPVFILFVL LLCFLSIFLL RDLLHFLSLW LRRRRRLRAD ADAASDATPD
101: THASHKPAGL DPAVLATFPT VRWFEETHRP ASGQAECAVC LSEFAAGDAV RLLTVCRHAF HTACIDSWLG AHTTCPVCRS ELDAPAATPR YGGGGRIAIL
201: VDDQGDGSAA VADTDHAASS PANGGVQSRP DR

Best Arabidopsis Sequence Match ( AT2G35420.1 )
(BLAST)

001: MSSTTSIDSI PATAVFPSVS MPVTVVLTGV LLFVIFAGFF SLFLWQFLLN RLFTTWNLQR TPYGDLIHVA TPPENTGLDP FIIRSFPVFH YSSATKKNHG
101: TECAICLSEF SDEDTVRLIT VCRHPFHSNC IDLWFELHKT CPVCRCELDP GMIGSGRLES FHNTVTITIQ DINHDEENPP TAGSSKRLIE ASAWRFSRSH
201: STGHFMVKTT DANVKSKRRH YQTGSCVSFD ELTRYEGAGW QWLGDSSHIS RIEV

Arabidopsis Description

ATL28RING-H2 finger protein ATL28 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKR1]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.