Factsheet for Zm00001d014612_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90301	Sorghum	endoplasmic reticulum, golgi, vacuole	92.7	91.54
Os06t0695900-01	Rice	endoplasmic reticulum, vacuole	82.12	81.7
TraesCSU01G093700.1	Wheat	plastid	80.86	80.65
TraesCS7B01G327800.1	Wheat	plastid	81.61	80.6
TraesCS7D01G420000.1	Wheat	plastid	81.36	80.55
HORVU7Hr1G098470.1	Barley	plastid	80.6	80.0
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	43.58	47.01
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	44.58	46.09
CDX98867	Canola	endoplasmic reticulum, golgi	38.79	43.63
KRH62179	Soybean	plasma membrane	35.52	41.96
CDX70126	Canola	plasma membrane	41.06	40.45
Bra009136.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	40.55	39.85
AT5G05810.1	Thale cress	endoplasmic reticulum, golgi	40.3	39.31
VIT_11s0052g00530.t01	Wine grape	plasma membrane	43.58	37.86
KRH70712	Soybean	endoplasmic reticulum, extracellular, vacuole	19.4	36.15
Solyc07g007440.1.1	Tomato	plasma membrane, vacuole	37.78	35.71
PGSC0003DMT400078951	Potato	plasma membrane	37.78	35.55
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	28.21	28.64
Zm00001d026494_P001	Maize	plastid	13.85	27.09
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	26.7	26.04
Zm00001d030038_P001	Maize	plastid	11.34	19.4
Zm00001d005936_P001	Maize	plasma membrane	19.14	19.34
Zm00001d020789_P001	Maize	plasma membrane	18.89	18.84
Zm00001d003499_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	18.14	18.56
Zm00001d016901_P001	Maize	vacuole	16.12	18.44
Zm00001d031261_P001	Maize	golgi	16.62	17.51
Zm00001d048230_P001	Maize	golgi	16.62	17.37
Zm00001d037192_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	18.39	17.34
Zm00001d029395_P001	Maize	plasma membrane, plastid	16.37	16.97
Zm00001d027983_P001	Maize	plasma membrane, plastid	15.37	16.85
Zm00001d018122_P001	Maize	vacuole	16.37	15.51
Zm00001d052189_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	16.12	15.42

Protein Annotations

EntrezGene:103626372	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	UniProt:A0A1D6GUH1	ProteinID:AQK66620.1	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR14155	PANTHER:PTHR14155:SF78	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000220B9CF
EnsemblPlantsGene:Zm00001d014612	EnsemblPlants:Zm00001d014612_P001	EnsemblPlants:Zm00001d014612_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RING/U-box superfamily protein

Coordinates

chr5:-:55322500..55323693

Molecular Weight (calculated)

41170.9 Da

IEP (calculated)

9.500

GRAVY (calculated)

-0.262

Length

397 amino acids

Sequence
(BLAST)

001: MEPARRLLLS DYDGAIESPL PSPPPSSATP FRPGVAVVVG ILTSVFSITF LLLLYAKHCK RSAAESSGPY GSAGSGGGFG SSGNGAGGDR RNSGVDRAVV
101: ESLPVFRFGA LRGQKEGLEC AVCLGRFEPT EALRLLPKCR HGFHVECVDT WLDAHSTCPL CRSRVDPEDV LLLPEPPKPS TTGPPDPPET KAAAAAAAGK
201: EPAPAPPPAP APTPAQSGRR ISGRHSTGSV RAPGRVGPAS RRSADGGVAV GCFDGAKVRK DRVLLVEPAA VVAEPDPVAF DRRFGHRILV STAGGCKGET
301: APAAQQRWSD LRPSDLMFVR AEFLVTDAGR HSCSAAVNSG NARSAIGVRS VSELAGVRRL PPIRAGACEG EPRAGGGGAR RWPGSSWWAP RGDPGRA

Best Arabidopsis Sequence Match ( AT5G05810.1 )
(BLAST)

001: MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV

Arabidopsis Description

ATL43ATL43 [Source:UniProtKB/TrEMBL;Acc:A0A178ULT1]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.