Factsheet for Zm00001d005936_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020789_P001	Maize	plasma membrane	83.72	82.66
EER99041	Sorghum	endoplasmic reticulum, plasma membrane	84.99	81.07
Os09t0468300-00	Rice	golgi, plasma membrane	71.76	72.87
TraesCS5D01G254900.1	Wheat	golgi, plasma membrane	69.97	70.15
HORVU5Hr1G069980.1	Barley	plasma membrane	67.94	69.53
TraesCS5A01G248100.1	Wheat	plasma membrane	69.97	69.27
TraesCS5B01G245800.1	Wheat	plasma membrane	69.72	69.19
TraesCS3B01G549900.1	Wheat	vacuole	51.91	64.76
TraesCS3D01G495500.1	Wheat	vacuole	59.8	60.88
Zm00001d031261_P001	Maize	golgi	47.07	49.07
KRG92822	Soybean	endoplasmic reticulum, plasma membrane, vacuole	39.69	46.43
KRH33975	Soybean	golgi, plasma membrane, vacuole	40.97	44.85
CDY53236	Canola	plasma membrane	36.13	40.92
KRG96857	Soybean	vacuole	38.17	40.0
Bra010641.1-P	Field mustard	extracellular, golgi	31.3	39.94
CDX90377	Canola	extracellular, golgi	31.3	39.94
AT4G09100.1	Thale cress	extracellular	13.23	39.39
Zm00001d003499_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	38.68	39.18
Bra036631.1-P	Field mustard	plasma membrane	34.86	39.14
CDY19719	Canola	endoplasmic reticulum, plasma membrane, vacuole	34.86	39.14
KRH68588	Soybean	plasma membrane	36.39	39.07
CDY39477	Canola	extracellular	30.79	39.03
CDX99986	Canola	plasma membrane	34.61	38.97
Bra040642.1-P	Field mustard	plasma membrane	38.17	38.86
CDY18787	Canola	plasma membrane	38.17	38.76
Zm00001d037192_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	41.48	38.72
AT5G27420.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	36.13	38.59
AT3G05200.1	Thale cress	plasma membrane	38.17	37.69
Bra009960.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	29.01	37.5
CDX86162	Canola	endoplasmic reticulum, plasma membrane, vacuole	29.01	37.5
VIT_14s0128g00120.t01	Wine grape	plasma membrane, plastid, vacuole	39.19	36.67
KRH52998	Soybean	endoplasmic reticulum, extracellular, plasma membrane	30.79	36.23
Bra039454.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	35.37	36.01
CDX86163	Canola	plasma membrane	27.48	36.0
CDX80653	Canola	plasma membrane	27.74	35.97
CDY25038	Canola	plasma membrane	33.84	35.95
AT4G40070.1	Thale cress	extracellular, golgi, mitochondrion, plastid	29.52	35.91
CDX82175	Canola	extracellular	21.37	35.9
KRH62285	Soybean	endoplasmic reticulum, plasma membrane, vacuole	31.04	35.88
KRH72413	Soybean	cytosol, golgi, vacuole	34.1	35.83
Zm00001d052189_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	37.66	35.66
Zm00001d018122_P001	Maize	vacuole	37.91	35.56
CDX75097	Canola	extracellular	12.47	35.51
Solyc03g112340.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	35.88	35.43
CDY05577	Canola	plasma membrane	34.35	35.34
Bra009962.1-P	Field mustard	mitochondrion, plastid	25.7	35.31
Bra020591.1-P	Field mustard	plasma membrane	34.1	35.17
PGSC0003DMT400046825	Potato	endoplasmic reticulum, plasma membrane, vacuole	35.37	34.92
KRH16796	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	33.59	34.83
VIT_18s0001g06670.t01	Wine grape	extracellular, plasma membrane, vacuole	34.61	34.17
Bra038386.1-P	Field mustard	extracellular	11.96	34.06
CDY48058	Canola	extracellular	11.96	34.06
KRH72412	Soybean	nucleus, plasma membrane, plastid	31.55	32.12
PGSC0003DMT400073575	Potato	extracellular, plasma membrane	35.37	32.1
AT2G35000.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	30.79	32.01
CDY31657	Canola	extracellular, plasma membrane, plastid	29.77	31.79
AT2G34990.2	Thale cress	plasma membrane	26.21	31.79
CDX84269	Canola	endoplasmic reticulum, plasma membrane, plastid	29.52	31.52
Bra005374.1-P	Field mustard	plasma membrane, plastid, vacuole	29.26	31.25
Bra003887.1-P	Field mustard	endoplasmic reticulum, plasma membrane	28.5	31.2
Zm00001d016901_P001	Maize	vacuole	27.48	31.12
AT4G09120.1	Thale cress	plasma membrane	27.23	31.01
CDX84270	Canola	cytosol, plastid, vacuole	24.68	30.99
KRH16794	Soybean	plasma membrane	30.79	30.87
CDY70284	Canola	plasma membrane	30.53	30.85
PGSC0003DMT400005472	Potato	endoplasmic reticulum, plasma membrane, vacuole	30.53	30.69
AT1G35330.1	Thale cress	endoplasmic reticulum	25.45	30.49
CDX82179	Canola	plasma membrane	27.23	30.48
AT1G72200.1	Thale cress	plasma membrane	31.3	30.45
Bra005375.1-P	Field mustard	cytosol, nucleus, plastid	24.17	30.35
CDY31656	Canola	cytosol, endoplasmic reticulum, plastid	24.17	30.35
Bra001139.1-P	Field mustard	extracellular, golgi, plasma membrane	26.72	30.17
Zm00001d027983_P001	Maize	plasma membrane, plastid	27.74	30.11
Bra000673.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	25.95	30.09
CDY62007	Canola	golgi, plasma membrane	28.75	30.05
CDY05049	Canola	plasma membrane	22.14	29.79
Bra040855.1-P	Field mustard	golgi, plasma membrane	28.5	29.79
CDY21367	Canola	golgi, plasma membrane	28.5	29.79
Solyc04g074820.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	29.77	29.77
Zm00001d026494_P001	Maize	plastid	15.27	29.56
Bra008016.1-P	Field mustard	plasma membrane	30.28	29.53
CDY03651	Canola	plasma membrane	30.28	29.53
CDX90713	Canola	extracellular, golgi, plasma membrane	25.45	29.5
CDX82176	Canola	extracellular	27.23	29.32
Zm00001d048230_P001	Maize	golgi	28.24	29.21
Bra012330.1-P	Field mustard	golgi, plasma membrane	25.45	29.07
AT4G09110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	22.14	28.81
Zm00001d029395_P001	Maize	plasma membrane, plastid	27.99	28.72
AT1G22500.1	Thale cress	plasma membrane	27.74	28.61
AT4G09130.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	25.95	28.57
CDY12022	Canola	plasma membrane	25.45	28.33
CDY05145	Canola	plasma membrane	21.12	27.95
CDY27787	Canola	extracellular, plasma membrane, vacuole	21.37	27.91
Bra008015.1-P	Field mustard	plasma membrane	27.99	27.78
CDY03652	Canola	plasma membrane	27.99	27.78
Bra028075.1-P	Field mustard	plasma membrane	24.94	27.76
CDY03116	Canola	plasma membrane	24.68	27.48
CDY70750	Canola	extracellular, mitochondrion, nucleus	21.12	27.39
Solyc12g087860.1.1	Tomato	vacuole	25.95	27.35
Zm00001d030038_P001	Maize	plastid	16.03	27.16
PGSC0003DMT400045807	Potato	plasma membrane	25.95	26.98
CDY12527	Canola	extracellular, plasma membrane, vacuole	13.23	21.85
CDY25739	Canola	endoplasmic reticulum, extracellular, plasma membrane	12.72	21.01
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	19.59	19.69
Zm00001d014612_P001	Maize	peroxisome	19.34	19.14
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	18.83	18.18
CDY50446	Canola	mitochondrion	10.69	17.57

Protein Annotations

EntrezGene:100274267	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	UniProt:B4FZV3	EMBL:BT042641	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016874	InterPro:IPR001841
InterPro:IPR013083	ProteinID:ONM22387.1	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF322
SMART:SM00184	SUPFAM:SSF57850	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00017B7494	EnsemblPlantsGene:Zm00001d005936
EnsemblPlants:Zm00001d005936_P001	EnsemblPlants:Zm00001d005936_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

E3 ubiquitin-protein ligase ATL6

Coordinates

chr2:-:193409296..193410477

Molecular Weight (calculated)

41086.6 Da

IEP (calculated)

9.726

GRAVY (calculated)

-0.197

Length

393 amino acids

Sequence
(BLAST)

001: MDTTLLRSNG RLLPLFLLLL AAADFTAVQG QGGQQQQPGP AGGAYYSQSF SPSMAIVIVV LIAAFFFLGF FSIYVRHCYG DGSSGYSANR PPAPGGAAAR
101: SRRQRGLDEA VLESFPTMAY ADVKAHKAGK GALECAVCLS EFDDDETLRL LPKCSHVFHP DCIDTWLASH VTCPVCRANL VPDANAPPPP PPADDDAPEL
201: LPPPPVSAPP AAAAAAVVID VDETEEERII REEANELVRI GSVKRALRSK SGRAPARFPR SHSTGHSLAA SATTGTGAGA GASTERFTLR LPEHVLRDLA
301: AAGKLQRTTS LVAFRSSRGG STRRGVSVRT GGGEGSSRAG RSIRLGQSGR WPSFLSRTFS ARLPAWGSRS TRRGVEADGS SKGGRAAGAG AAG

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.