Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G09110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 62.32 | 71.19 |
| Bra000673.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 66.38 | 67.55 |
| CDY05049 | Canola | plasma membrane | 56.81 | 67.12 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 65.22 | 66.37 |
| AT4G09130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 67.83 | 65.55 |
| AT1G35330.1 | Thale cress | endoplasmic reticulum | 48.12 | 50.61 |
| AT2G35000.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 42.9 | 39.15 |
| AT4G09100.1 | Thale cress | extracellular | 14.78 | 38.64 |
| AT2G34990.2 | Thale cress | plasma membrane | 35.65 | 37.96 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 29.86 | 29.86 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 26.38 | 29.84 |
| AT4G40070.1 | Thale cress | extracellular, golgi, mitochondrion, plastid | 27.83 | 29.72 |
| AT3G05200.1 | Thale cress | plasma membrane | 33.33 | 28.89 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 30.72 | 28.8 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 28.7 | 28.78 |
| AT1G22500.1 | Thale cress | plasma membrane | 31.59 | 28.61 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 29.57 | 28.49 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 23.77 | 28.08 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 28.41 | 27.76 |
| HORVU5Hr1G069980.1 | Barley | plasma membrane | 30.72 | 27.6 |
| TraesCS5D01G254900.1 | Wheat | golgi, plasma membrane | 31.3 | 27.55 |
| AT1G72200.1 | Thale cress | plasma membrane | 32.17 | 27.48 |
| HORVU4Hr1G080840.1 | Barley | cytosol | 18.84 | 27.43 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 30.72 | 27.32 |
| Zm00001d005936_P001 | Maize | plasma membrane | 31.01 | 27.23 |
| TraesCS5A01G248100.1 | Wheat | plasma membrane | 31.01 | 26.95 |
| Os09t0468300-00 | Rice | golgi, plasma membrane | 30.14 | 26.87 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 30.43 | 26.52 |
| Zm00001d020789_P001 | Maize | plasma membrane | 30.43 | 26.38 |
| TraesCS3D01G495500.1 | Wheat | vacuole | 28.7 | 25.65 |
| GSMUA_AchrUn_... | Banana | plastid | 26.67 | 25.56 |
| GSMUA_Achr10P... | Banana | plasma membrane | 28.7 | 25.52 |
| EER99041 | Sorghum | endoplasmic reticulum, plasma membrane | 30.43 | 25.49 |
| HORVU4Hr1G022090.1 | Barley | endoplasmic reticulum, golgi, plasma membrane | 15.36 | 25.0 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 22.61 | 24.76 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 28.99 | 24.75 |
| HORVU6Hr1G022590.1 | Barley | golgi, mitochondrion | 28.99 | 24.75 |
| TraesCS6D01G113000.1 | Wheat | golgi | 28.7 | 24.69 |
| TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 28.12 | 23.89 |
| AT4G17920.1 | Thale cress | plasma membrane | 20.0 | 23.88 |
| Os08t0484200-01 | Rice | golgi | 28.12 | 23.49 |
| Zm00001d031261_P001 | Maize | golgi | 25.51 | 23.34 |
| EES18560 | Sorghum | golgi, plasma membrane | 26.09 | 22.9 |
| OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 27.83 | 22.7 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 27.25 | 22.65 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 27.54 | 22.57 |
| TraesCS4A01G404600.1 | Wheat | plasma membrane | 23.19 | 22.54 |
| AT5G46650.1 | Thale cress | plasma membrane | 18.84 | 22.49 |
| HORVU4Hr1G078260.1 | Barley | plasma membrane | 23.19 | 22.41 |
| Os03t0188200-01 | Rice | golgi | 22.9 | 22.38 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 22.9 | 22.25 |
| Zm00001d018122_P001 | Maize | vacuole | 26.96 | 22.2 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 25.8 | 22.14 |
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 25.8 | 21.98 |
| TraesCS4D01G302600.1 | Wheat | plasma membrane | 22.61 | 21.97 |
| HORVU6Hr1G077610.1 | Barley | plasma membrane | 25.8 | 21.92 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 27.54 | 21.74 |
| TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 25.51 | 21.73 |
| Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 27.83 | 21.72 |
| TraesCS7D01G178000.1 | Wheat | golgi | 25.51 | 21.57 |
| TraesCS7B01G081700.1 | Wheat | golgi | 25.8 | 21.5 |
| TraesCS7A01G176700.1 | Wheat | golgi | 25.51 | 21.2 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 22.03 | 20.99 |
| TraesCS4A01G104900.1 | Wheat | mitochondrion | 23.48 | 20.93 |
| EER92732 | Sorghum | golgi | 22.32 | 20.92 |
| AT2G35420.1 | Thale cress | plasma membrane, plastid | 15.36 | 20.87 |
| HORVU4Hr1G057610.1 | Barley | plastid | 24.35 | 20.39 |
| TraesCS4D01G200100.1 | Wheat | plastid | 24.35 | 20.29 |
| Zm00001d048230_P001 | Maize | golgi | 22.03 | 20.0 |
| KXG39223 | Sorghum | golgi, plasma membrane, plastid, vacuole | 21.45 | 19.12 |
| AT2G27940.1 | Thale cress | plasma membrane | 13.04 | 18.99 |
| Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 23.77 | 18.85 |
| TraesCS4B01G199100.1 | Wheat | plastid | 23.77 | 18.34 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 20.0 | 18.02 |
| OQU76061 | Sorghum | cytosol, peroxisome, plasma membrane | 28.41 | 17.98 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 18.84 | 16.67 |
| HORVU7Hr1G036380.2 | Barley | endoplasmic reticulum | 20.0 | 16.59 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 18.84 | 15.05 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 16.81 | 14.25 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:826490 | EMBL:AC005359 | ProteinID:AEE82724.1 | ArrayExpress:AT4G09120 |
| EnsemblPlantsGene:AT4G09120 | RefSeq:AT4G09120 | TAIR:AT4G09120 | RefSeq:AT4G09120-TAIR-G | EnsemblPlants:AT4G09120.1 | TAIR:AT4G09120.1 |
| Unigene:At.54225 | ProteinID:CAB78036.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0046872 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_192651.1 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR14155 | PANTHER:PTHR14155:SF208 | UniProt:Q9M0R5 | SMART:SM00184 | SUPFAM:SSF57850 | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI00000A7CD2 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
ATL36Putative RING-H2 finger protein ATL36 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R5]
Coordinates
chr4:+:5813998..5815119
Molecular Weight (calculated)
38798.6 Da
IEP (calculated)
8.272
GRAVY (calculated)
-0.172
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIFTRYHLP RVVSGVILPL FLFHLLPYVT CQQESVPTNS IRQTNLSADS IIAIVVLAIF ISLGMVSCCL HCIFYREEIG AAGQDVLHSR ARRGLEKEVI
101: ESFPTFLYSE VKGLKIGKGG VECAICLSEF EDQETLRWMP PCSHTFHANC IDVWLSSWST CPVCRANLSL KPGESYPYLN MDVETGGVQK LPNERSLTGN
201: SVTTRSRSTG LLSSWRMAEI FVPRSHSTGH SLVQQLGENL DRFTLQLPEE VQRQLVSLNL IRRSHIVLPQ AVSSRQGYRS GSVGSERGGF SQGRQTHRRA
301: LSMSFSFSFQ TASVRSIHDM NDQAQAKDKY FGERSFERLM PEEKV
101: ESFPTFLYSE VKGLKIGKGG VECAICLSEF EDQETLRWMP PCSHTFHANC IDVWLSSWST CPVCRANLSL KPGESYPYLN MDVETGGVQK LPNERSLTGN
201: SVTTRSRSTG LLSSWRMAEI FVPRSHSTGH SLVQQLGENL DRFTLQLPEE VQRQLVSLNL IRRSHIVLPQ AVSSRQGYRS GSVGSERGGF SQGRQTHRRA
301: LSMSFSFSFQ TASVRSIHDM NDQAQAKDKY FGERSFERLM PEEKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.